Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1050 ATGGAGTGGCAAAGAGGCCACATCATAGGCCGGGGCTCGTCAGCCACCGTCTCCACCGCCACGTGCTGCGCCGGTGGTGGTGTCTTTGCCGTCAAGTCAGCCGAGCTGTCTCAATCAGAGTCTTTGAAAAGGGAGCAAACAATTTTGTCCTCTCTAAGTAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATTACCATGGACAGCAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCTTTTGGCACGGTTGCTCAGGCCACTCGCCGCCACGGTGGCCGGCTGGAGGAGGCGGCTATGGCACGCTACACGAGGCAAATCGTTCAGGGGCTAGAGTACTTGCATTCAAAAGAATTGGTGCATTGTGACATCAAGGGTGCTAATATCTTGATTGGTGAAGATGGGGTGAAAATTGGAGACTTGGGGTTCGCCAAGAGTGTGGTGGATTCCGCGGTGGTGATCGGCGGCACACCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGCACTGTGGTTGAAATGGCCACTGGCGGTGTACCATGGCCAAGTGTGGAAGACCCTTTTTCGGTGCTTTATCATATTGCATATTCTAGTGAAGTGCCTGAGATTCCTTGTTTTCTATCTGAGGAAGCAAGGGATTTTCTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAAGGCTAGTGAACTTTTGAAGCATCCATTTATTGGGAAATTATGTTCCAACAATAAGGAAGTTTTGGAATCTAATTCAAGTTCCCCAACTAGTGTTCTTGAGCAAGGGTATTGGGGCTCTGTGGAAGACTCAGAAAGTGTTGGCAATTTGATTCGCAAGACACAAAAATTTGAACTTTTGGCTGCTGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGGTAGCCTGTTGGGCACAACATGATGATGAAAACTGGATCACAGCCAGAGGGAATGGTGGGAAAGGTTTTGGCAATTGTGGGTCAGGGACAGCCTCTGCTAGTCATGGGTTGTCTCTCTAG 1065 0.5042 MEWQRGHIIGRGSSATVSTATCCAGGGVFAVKSAELSQSESLKREQTILSSLSSPYVVAYKGCDITMDSNKLLFNLFMEYMPFGTVAQATRRHGGRLEEAAMARYTRQIVQGLEYLHSKELVHCDIKGANILIGEDGVKIGDLGFAKSVVDSAVVIGGTPMFMAPEVARGEEQGCASDIWSLGCTVVEMATGGVPWPSVEDPFSVLYHIAYSSEVPEIPCFLSEEARDFLGKCLRRNPQERWKASELLKHPFIGKLCSNNKEVLESNSSSPTSVLEQGYWGSVEDSESVGNLIRKTQKFELLAAGRVRMLALSSGVACWAQHDDENWITARGNGGKGFGNCGSGTASASHGLSL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1050 354 CDD STKc_MAPKKK 2 253 - -
Pvu11g1050 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Pvu11g1050 354 Gene3D Transferase(Phosphotransferase) domain 1 2 311 - -
Pvu11g1050 354 PANTHER MAP KINASE KINASE KINASE 1 335 - -
Pvu11g1050 354 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1050 354 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Pvu11g1050 354 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1050 354 SUPERFAMILY Protein kinase-like (PK-like) 3 272 IPR011009 -
Pvu11g1050 354 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 335 - -
Pvu11g1050 354 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1050 Pvu-Chr11 11135969 11137311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1050 1 333 MAP Kinase Kinase Kinase AT1G05100 47.592 2.45e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pvu11g1050 Pkinase 2.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1050 K20716 - gmx:100819665 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1050 11 11135969 11137311 Pvu6g1540 6 26114743 26116104 ECH
Pvu11g1050 11 11135969 11137311 Pvu11g1050 11 11135969 11137311 ECH
Pvu11g1050 11 11135969 11137311 Pvu3g0839 3 12972232 12973601 ECH
Pvu5g1198 5 33511213 33512412 Pvu11g1050 11 11135969 11137311 PCT