Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1041 ATGTTCAACGGTATGATGGATCCGGATTTGATGAGGATCGCTCAGGAGCAGATGAGTCGCATGTCACCTGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAGGAACATGAGTTCTGAAGACTTTAAACTTGCGGCTGAGCAGTTAAAGCATACCCGTCCGGAAGAAATGGCTGAGATTGGTGAGAAGATGGCCAATGCGTCCCCTGATGAAGTGGCAGCGATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCAGCTGAGATGTTGAAGAAGCAGGGCAATGAACTTCATAGTCAAGGAAAGTTCAGTGAAGCTTTGAAGAAGTATATGCTTGCTAAAGAAAACATTAGAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTTCTGGCATGTTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATAATGAATGCATAAAAGAAGGTTCTGAGGTTCTGGCATATGACTTGAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCTATTAAATGATGCTGTTTCTGATCTGAGCAAGGCACTTGAAGTTTCCCCTGATGATGATACAGTTGCAGAGCTTTTACGGGATGCCAAGGAAAAATTGACAATGGGAGGTGGTGAGCAATCGACTAGTGGACTTGTAATCGAAGAAATAACTGAAGAAGGCGAGGATGTGCCTCCTCTAAGCTCTTTGGAACAAACAGTGGTTCAAAAAAAATCTAGTGACACCTCTAAGAGTAGCAGTACAGCTAACAATGGAAATCCAAAATCAAATGCAGACAGTTTAGATGCATTGAGAAAAGATCCTGAAGCTGTCAGGTCATTCCAGAACTTCATTTCAAACACCAATCCCGCCACGCTGGCTTCTCTGAATGCTGGCCAATTCAAAGATGTGTCCCCAGATATGATCAAAACTACCTCTGATATGATTAGTAAGATGGCGCCTGATGAACTGCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGGGACAACCAATATTTTAGAGGAGGTCCCCCCGATTCTTCTTTCAACCCGGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCTGCTGATGACCTTAAGAAGATGTTTGAAATGGCATCCTCACTGAAAGGGAAAGAATCTATTCCATCAGCAGCAGCAGTAGATGATATCCAAAGAAATTATCAGTCAAACATCCCATCATCAAGTACTAATGAAACTACTAATTTTGGGGAATCAAGTTCTTCTCGTAATGTGTTTTCCAATATGAGAAGTGCTTCTCAGTCTAACTTTCCTTCCTCGAGTACTGATCTACAAGAACAGATGAAAAACCAGATGAAAGATCCAGCCATGCGGCAGATGTTCACATCCATGATTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGTGAACAATTTGGTGTCAAACTTTCACCAGAAGAGGCAGCAAAAGCTCAAAAAGCCGTCTCTTCCATGTCACCGGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGCTTCAAAGAGGAGTTGAATCTGCAAAAAAGACAAAGAACTGGCTGCTAGGGAGGCCTGGCATGATCTTGGCAATATGCATGCTCATTTTGGCTGTCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1749 0.4311 MFNGMMDPDLMRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMRNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPDEVAAMRSRVDAQIKYQLSAAEMLKKQGNELHSQGKFSEALKKYMLAKENIREIPSFQSRKLLLACSLNLMSCYLKTRQYNECIKEGSEVLAYDLKNLKALYRRGQAYKELGLLNDAVSDLSKALEVSPDDDTVAELLRDAKEKLTMGGGEQSTSGLVIEEITEEGEDVPPLSSLEQTVVQKKSSDTSKSSSTANNGNPKSNADSLDALRKDPEAVRSFQNFISNTNPATLASLNAGQFKDVSPDMIKTTSDMISKMAPDELQKMLDMASSFQGDNQYFRGGPPDSSFNPGSMPPNVTPDMFKAASDMISKMPADDLKKMFEMASSLKGKESIPSAAAVDDIQRNYQSNIPSSSTNETTNFGESSSSRNVFSNMRSASQSNFPSSSTDLQEQMKNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEEAAKAQKAVSSMSPESLDKMMLWADRLQRGVESAKKTKNWLLGRPGMILAICMLILAVILHRLGFIGG* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1041 582 SMART tpr_5 146 179 IPR019734 GO:0005515
Pvu11g1041 582 SMART tpr_5 103 136 IPR019734 GO:0005515
Pvu11g1041 582 SMART tpr_5 180 213 IPR019734 GO:0005515
Pvu11g1041 582 MobiDBLite consensus disorder prediction 256 285 - -
Pvu11g1041 582 MobiDBLite consensus disorder prediction 429 450 - -
Pvu11g1041 582 PANTHER OUTER ENVELOPE PROTEIN 61 59 581 - -
Pvu11g1041 582 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Pvu11g1041 582 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
Pvu11g1041 582 MobiDBLite consensus disorder prediction 247 288 - -
Pvu11g1041 582 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Pvu11g1041 582 SUPERFAMILY TPR-like 96 226 IPR011990 GO:0005515
Pvu11g1041 582 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Pvu11g1041 582 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 59 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1041 Pvu-Chr11 10986688 10992237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1041 99 227 Calmodulin-binding Proteins AT5G48570 37.037 4.86e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1041 - - gmx:100800315 977.237