Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1030 ATGTTTGGGAGAGCACCCAAGAAGAGCGATAACACGCGGTACTACGAAATCCTCGGCGTCTCCAAGAACGCTTCACAGGATGATTTGAAGAAGGCTTACAAGAAAGCCGCCATTAAGAATCACCCGGACAAGGGCGGTGATCCCGAGAAGTTCAAAGAGTTGGCTCAAGCTTATGAGGTTCTGAGTGACCCTGAGAAGCGTGAGGTATATGATCAGTACGGTGAAGATGCCCTTAAGGAAGGAATGGGCGGTGGCGGTGGCCATGATCCGTTTGATATTTTTTCATCTTTCTTTGGCGGTGGGAGTCCGTTTGGATCAGGTGGTAGTAGTCGAGGTAGGAGACAGAGACGCGGAGAAGATGTGGTTCACCCTCTCAAGGTCTCTCTGGAGGACCTTTACCTTGGGACTTCAAAGAAGCTGTCGCTCTCCAGAAATGTCATATGCTCCAAGTGCACTGGCAAGGGTTCGAAGTCTGGGGCTTCGATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACACCTTGGTCCATCCATGATTCAGCAAATGCAGCATGCTTGCAATGAATGTAAGGGTACTGGAGAAACTATCAATGATAGAGATCGCTGCCCACAGTGCAAGGGAGAGAAGGTTGTGCAGGAGAAGAAAGTTCTTGAAGTTATTGTGGAAAAGGGAATGCAGAATGGCCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCGGACACAATTACTGGGGATATCGTCTTTGTGCTTCAGCAGAAGGAGCATCCTAAATTCAGAAGAAAGGCTGAAGACCTTTTTGTCGAGCACACCTTGTCCCTTACTGAGGCCTTGTGTGGTTTCCAATTTGTCCTGACTCACTTGGATAGCCGCCAACTTCTTATCAAATCTAATCCTGGGGAAGTTGTCAAACCAGATTCATACAAGGCTATTAATGATGAGGGAATGCCCATGTACCAGAGGCCATTCATGAAGGGGAAGCTTTATCTTCACTTCACTGTGGAATTTCCAGATTTTCTAAATCCAGAACAGGTTAAGGCTTTGGAGGCCGTTCTGCCACCAAAGCAGCCTTCACAGTTAACAGACATGGAGCTGGACGAGTGTGAGGAGACCACACTTCATGATGTCAACATGGAGGATGAGACTAGGAGGAGGCAGCAACAAGCTGCTCAGGAGGCATATGAGGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAGTGCGCCCAGCAGTGA 1257 0.4837 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREVYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSPFGSGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCTGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKAEDLFVEHTLSLTEALCGFQFVLTHLDSRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYLHFTVEFPDFLNPEQVKALEAVLPPKQPSQLTDMELDECEETTLHDVNMEDETRRRQQQAAQEAYEEDDDMPGGAQRVQCAQQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1030 418 SMART dnaj_3 12 66 IPR001623 -
Pvu11g1030 418 Pfam DnaJ domain 14 71 IPR001623 -
Pvu11g1030 418 Gene3D DnaJ domain 10 108 IPR036869 -
Pvu11g1030 418 CDD DnaJ 14 63 IPR001623 -
Pvu11g1030 418 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 418 IPR044713 GO:0006457|GO:0030544
Pvu11g1030 418 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Pvu11g1030 418 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Pvu11g1030 418 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 418 - -
Pvu11g1030 418 Gene3D - 109 260 - -
Pvu11g1030 418 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Pvu11g1030 418 Gene3D - 262 344 - -
Pvu11g1030 418 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Pvu11g1030 418 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Pvu11g1030 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Pvu11g1030 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 354 IPR008971 GO:0006457|GO:0051082
Pvu11g1030 418 PRINTS DnaJ domain signature 15 33 IPR001623 -
Pvu11g1030 418 PRINTS DnaJ domain signature 46 66 IPR001623 -
Pvu11g1030 418 PRINTS DnaJ domain signature 66 85 IPR001623 -
Pvu11g1030 418 MobiDBLite consensus disorder prediction 378 418 - -
Pvu11g1030 418 CDD DnaJ_C 119 346 - -
Pvu11g1030 418 Hamap Chaperone protein DnaJ [dnaJ]. 10 382 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pvu11g1030 418 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Pvu11g1030 418 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Pvu11g1030 418 Gene3D - 148 214 - -
Pvu11g1030 418 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Pvu11g1030 418 MobiDBLite consensus disorder prediction 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1030 Pvu-Chr11 10798426 10801334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1030 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.41e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1030 K09503 - gmx:547558 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1030 11 10798426 10801334 Pvu11g1030 11 10798426 10801334 ECH
Pvu5g1222 5 33932467 33934778 Pvu11g1030 11 10798426 10801334 PCT