Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1024 ATGGAAGAAATGGAGGTTCCTGCCCTTTTCCTCTGCCCAGTTTCTTTGCAGCTCATGAGAGACCCCGTGACAGTGTGCACAGGAATCACATATGACAGAGAAAACATTGAGAGATGGCTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACACCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCATTCACAATGCCTGGCTTGGACTTGAAACCTTTTCCTCTCCAAAGACAACCATTGACCAAACTCAGATTGTCAAACTTCTCTTAGAGGCAAAGAAGTTCCCGGAAAAACAGCTCAACTGTCTTAGTAGGCTTCAATATATTGCTTTTGAAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCTGGGGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAACTGTTATGAGTGAAGCAGCTATAGAAGTCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAATGAAGGGACTCAGTTTGTCGTGTCTTTGCTTCATGTGTTGAAGCTTGGAAATTGCCAATCTCGAGGTTATACAACTTTGCTATTGAAGTCAGCATTTAAGGTGGCTAGTCCAACCCAATTGAACAATGTCACGGCAGAAGTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCAGTAGAGGCTTCAAAGGCAGCTTTGAAACTTCTGGTGGAGTTGTGTTCGTGGGGCAGGAACAAGATCAAAGCAGTGGAGTGTGGTGGGGTTTTAGTCCTCGTTGAGCTACTTCTTGACGTGTCTGAAAGGAGAGCATGTGAACTCATGTTGATAGCTTTGGAGAAACTTTGTGGTTGTGCAGAAGGAAGGGCTGAATTGGTGAACCATGGAGCTGGAGTGGCTGTTGTGGCAAAGAAAATTCTGAGGGTGTCACCAGTTGCAAGTGATAGAGGGGTCAAAATTTTGACCTCCATTTGTAGGCATTCAGCCACACCTAGAGTTCTTCATGAAATGCTGCTACTTGGGGCAGTGTCAAAGTTGTGTTTGGTGCTTCAAGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCTAGGGAGACACTCAAATTGCACTCTCTAGTTTGGAGGAATTCCACATGTATTCCTGCCCCTTTGCTTGCATCCTATCCATGA 1200 0.4408 MEEMEVPALFLCPVSLQLMRDPVTVCTGITYDRENIERWLFSCKNNKTCPVTRQSLSHTDLTPNHTLQRLIQAWCIHNAWLGLETFSSPKTTIDQTQIVKLLLEAKKFPEKQLNCLSRLQYIAFESESNKICLESAGAIDFLASTMMINSTVMSEAAIEVMFHLNPSESQLKNLMNNEGTQFVVSLLHVLKLGNCQSRGYTTLLLKSAFKVASPTQLNNVTAEVFVEIIRVLRDQISVEASKAALKLLVELCSWGRNKIKAVECGGVLVLVELLLDVSERRACELMLIALEKLCGCAEGRAELVNHGAGVAVVAKKILRVSPVASDRGVKILTSICRHSATPRVLHEMLLLGAVSKLCLVLQVEGCFKAKERARETLKLHSLVWRNSTCIPAPLLASYP* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1024 399 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Pvu11g1024 399 CDD RING-Ubox_PUB 10 54 IPR045210 -
Pvu11g1024 399 SUPERFAMILY ARM repeat 108 361 IPR016024 -
Pvu11g1024 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Pvu11g1024 399 SUPERFAMILY RING/U-box 3 82 - -
Pvu11g1024 399 PANTHER WDSAM1 PROTEIN 1 399 IPR045185 GO:0061630
Pvu11g1024 399 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Pvu11g1024 399 PANTHER OS11G0573500 PROTEIN 1 399 - -
Pvu11g1024 399 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Pvu11g1024 399 Gene3D - 77 384 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1024 Pvu-Chr11 10634130 10635635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1024 2 399 U-box Gene Family AT2G35930 50.495 4.75e-137 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1024 - - var:108340160 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1232 5 34036412 34037898 Pvu11g1024 11 10634130 10635635 PCT