Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1023 ATGGCAGAAGTTGAAATTCCTCAGTATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACTACTGTGACAGGGATTACATATGATAGAGAAGGCATAGAGGAGTGGTTGCGTAAGGCCAAACATTGTGTTTGTCCTGTTACCAAACAATCACTTCCAAGGAGCACTCAATACTTAACCCCTAACCACACACTTCGGAGGCTTATTCAAGCTTGGTGTTCAGCATACACGGCCAATGGTGTTGATCGAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAGCTTCTGAAGGGTCTTGAGGCTCCTCATTCTTGTGGAACATCGTTGGAGAAGTTGCATGCTTTGGCCACACAAAGCCAGAGGAACAGAACTTGCATGGCTGAGGCTGGTGTAGCCAGGGCCATGGTCAAAGTCATTAACAAGAATTTCAAAGATGGAAACACAAACACCAGTTCCGTACAAGAAGCTTTGAGAATTGTTCATCTGCTTTGGAACAATCACAGCAGCATGAAACCTCTAGTTGGGGAGAGCTTGGACTTCATCTACTCTTTGACTTGGATTTTGAAGCATTATTTAGATGACAACAACATCAAGATGGTAAACGAAGCAATGCCCCTTTTAAAGTTGACAATCGAAGTTGCTGACTCAACCCTTTTGGGAAATTTAAGCCTTGAATTCTTCAAGGAAATGGTGAGAACTTTGAGAAAAAGAACACTATCTCAACAAACTATCAAGTCTGCTTTGCATGTGCTTATACAAACTAGCCTTTTGGGTAGAAACAGAACGAGGATTGTTGAAGCAGGTGCAGTCACACAACTCATAGAGCTCGAGCTTGAGAAACCAGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCTCATCTGTGTTCTTGTGCTGATGGAAGAGAACAGTTTGTAAGACATGCTGCGGGCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCTTCAAATACGGTTGTTCTAGAGATGCTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCCTATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGCATACAACTCTATTTGTTTACTAGGCACCAAAGGTGA 1233 0.4282 MAEVEIPQYFVCPISFQIMEDPVTTVTGITYDREGIEEWLRKAKHCVCPVTKQSLPRSTQYLTPNHTLRRLIQAWCSAYTANGVDRIPTPKTPLSMIQVQKLLKGLEAPHSCGTSLEKLHALATQSQRNRTCMAEAGVARAMVKVINKNFKDGNTNTSSVQEALRIVHLLWNNHSSMKPLVGESLDFIYSLTWILKHYLDDNNIKMVNEAMPLLKLTIEVADSTLLGNLSLEFFKEMVRTLRKRTLSQQTIKSALHVLIQTSLLGRNRTRIVEAGAVTQLIELELEKPEKNMTELIFNLLAHLCSCADGREQFVRHAAGIAVVSKRVLRVSAATDDRAIHVFSVIAKFSASNTVVLEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1023 410 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Pvu11g1023 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Pvu11g1023 410 SUPERFAMILY ARM repeat 114 388 IPR016024 -
Pvu11g1023 410 SUPERFAMILY RING/U-box 3 81 - -
Pvu11g1023 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Pvu11g1023 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
Pvu11g1023 410 PANTHER WDSAM1 PROTEIN 3 407 IPR045185 GO:0061630
Pvu11g1023 410 Gene3D - 107 393 IPR011989 -
Pvu11g1023 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1023 Pvu-Chr11 10596863 10598095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1023 3 400 U-box Gene Family AT2G35930 38.614 3.82e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1023 - - gmx:100787426 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1233 5 34052659 34054048 Pvu11g1023 11 10596863 10598095 PCT