Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1021 ATGGCGACGTACTTTCATGGTAGCACTTCAGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCGCAACACCCAGCGCAAAACATGCTCCTCGTCAATTCCAATAACGCTAGTAACACTAGCCCCACTTCCGCCAACGCGCTCAACTTGGGTAACTTCACCCACGCGCCACCACCTCCATCTCCCAACAACCACCGCGACCAACAACACCACCACCACCTGATTGGGCTTACCATTCCCTCATCAAACATCATCGGATCCAATACCGCCACCGGAGATCACGCTCGCCCATCGTTCCTTGGACACCATGAGTTCTCCGGGTTTCACGGCGGTGCTACCGCTGCAACAACAGCGTCAACTTCTCGTTCTAACTATAACTTATGGGGTTCCATATTTGATCAGTCTGCTTCGAATATGGTGGCAACAACAAACACCCCATCTGAAAATATGGGGTGTGTTGCTTCTGCTGTCACTGCATCGACCCAGATTGGTTTTCATAGGCCTAATCATCTGTCGCTGAGCCTTTCTTCACAACAAACACCTTACAGGTCTTTATCCGGGGATGTTCATGCTATATCTCCGGCGAGCCTCGGCGGTGATGATATGAGGGGTTTGCAGAACGGGGTTTCTAGCATGCATAGTGTTGCTTTGGGTTCCAAGTATTTGAAATCAACACAAGAGCTTCTTGACGAAGTTGTGAATGTGGGGAAGGGAATCTCCAAAGGGAGAGAATCTATGGAAGGGGCTAAGAAAGAGAAGATGAAGGGGAATATTGAATCAACTTCTGGGGTTGGCGATGGTTCGAGCTGTGGAGGGGAGAATAACGATGGAGGGAAACAAGGAGGTGAACTCGGCACGGCACAGAGACAAGAGCTTCAGATGAAGAAATCCAAGCTTGTGAGCATGCTCGATGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAATTGTGGTAACATCATTTGAGCAGGCTGCGGGTGTTGGAGCGGCAAAGTCTTACACAGCCCTTGCGTTAAGGACAATCTCAAAACAATTTCGGTGTCTCAAAGATGCTATCTCTTCTCAAATCAAGACAGCGAGCAAGACCTTGGGTGAAGATGATTGCTTAGGAGTTAAGGTAGAAAGTTCAAGGCTTAGGTACGTTGATCATCAACTGAGACAACAACGAGCATTGCAGCAGCTAGGAATGATCCAACACAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCTAAGGACTCCGACAAGGTTATGCTTGCAAAACAAACAGGGCTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAGGTGAAGCAAGAACCAAACAATGGCTCCCAGGACAACAACACAAATAGATCAAAAGAAAATAACAAAGAGTTATGGTCAGAAGCTAATGCTGCTACACATGAATCTGGTGGCTTGAGACTTAATCAAATTAATGTTCTCCAATCAAAGGCAGAAAGTTTCAATAATAATCAAACCACTTCCCCTACAGAAATCTCCAATTCTAATTCACTCTCAACATCTCCAATGGGAGGAGGAGGAGGAGGGTCTCTCCAATCTGGTTTCCATCTTGGGGATATGCAAAGTCCAAAAAGGCCAAGAAGCACTTCTGAAATGCAAAACTCTCCGGGTAGCATCCTTTCAGTGGACATGGAAATGAAGCCTCATGGAGAGACAAACACTAGAGAAGGAACCAACACAAAGTTTGGCATTGAAAACCACAGTGGGGGTTTTGGAGCATTTCCCATGGAAGACATTGGAAGGTTCCATCATGTCAGTGAACAACTGGCTCCAAGGTTTCATGGAAACGGAGTTTCTCTCACTCTTGGACTTCCACACAGTGAGAATCTTACTCTCTCGGGAACTCAGCATGGATTCCTCTCACCGAATATGCACTTGGGAATGAGAACAACCAATGAAAATGAGTTTTGTGGTGCCATCAACACCCCACCTTCTTCTCATTCAGCCACCAGTTATGATAACATCGACATCCAAAACAGAAAGAGGTTCGCTGCGCAGTTGTTGCGGGATTTCGTGGCCTGA 2202 0.4714 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHPAQNMLLVNSNNASNTSPTSANALNLGNFTHAPPPPSPNNHRDQQHHHHLIGLTIPSSNIIGSNTATGDHARPSFLGHHEFSGFHGGATAATTASTSRSNYNLWGSIFDQSASNMVATTNTPSENMGCVASAVTASTQIGFHRPNHLSLSLSSQQTPYRSLSGDVHAISPASLGGDDMRGLQNGVSSMHSVALGSKYLKSTQELLDEVVNVGKGISKGRESMEGAKKEKMKGNIESTSGVGDGSSCGGENNDGGKQGGELGTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVTSFEQAAGVGAAKSYTALALRTISKQFRCLKDAISSQIKTASKTLGEDDCLGVKVESSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNGSQDNNTNRSKENNKELWSEANAATHESGGLRLNQINVLQSKAESFNNNQTTSPTEISNSNSLSTSPMGGGGGGSLQSGFHLGDMQSPKRPRSTSEMQNSPGSILSVDMEMKPHGETNTREGTNTKFGIENHSGGFGAFPMEDIGRFHHVSEQLAPRFHGNGVSLTLGLPHSENLTLSGTQHGFLSPNMHLGMRTTNENEFCGAINTPPSSHSATSYDNIDIQNRKRFAAQLLRDFVA* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1021 733 ProSiteProfiles 'Homeobox' domain profile. 416 479 IPR001356 GO:0003677
Pvu11g1021 733 MobiDBLite consensus disorder prediction 258 297 - -
Pvu11g1021 733 SMART prehox3 224 371 IPR006563 -
Pvu11g1021 733 SMART HOX_1 419 483 IPR001356 GO:0003677
Pvu11g1021 733 Coils Coil 303 323 - -
Pvu11g1021 733 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 685 - -
Pvu11g1021 733 MobiDBLite consensus disorder prediction 275 289 - -
Pvu11g1021 733 Pfam Homeobox KN domain 436 475 IPR008422 GO:0003677|GO:0006355
Pvu11g1021 733 MobiDBLite consensus disorder prediction 542 603 - -
Pvu11g1021 733 Gene3D - 422 501 - -
Pvu11g1021 733 CDD homeodomain 419 480 IPR001356 GO:0003677
Pvu11g1021 733 Pfam Associated with HOX 231 370 IPR006563 -
Pvu11g1021 733 MobiDBLite consensus disorder prediction 583 600 - -
Pvu11g1021 733 MobiDBLite consensus disorder prediction 488 509 - -
Pvu11g1021 733 SUPERFAMILY Homeodomain-like 420 485 IPR009057 -
Pvu11g1021 733 MobiDBLite consensus disorder prediction 542 567 - -
Pvu11g1021 733 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1021 Pvu-Chr11 10563091 10568229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1021 1 733 Homeobox Transcription Factor Family AT2G35940 41.313 4.75e-128 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu11g1021 POX 2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1021 - - gmx:100786883 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1234 5 34059341 34065625 Pvu11g1021 11 10563091 10568229 PCT