Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1012 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGAGCATTTGGAGCTGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTTGCAAGACAGACTGAACGATGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCATCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGCTGCTATGTCTGCATTGTCACTGGATATTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTGCATCGTGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGCCTTGCCAAGACACTAAAAGCAGATGATTTGGCTTCCTCGGTGGTAGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCTGATATACCATATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCTTCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAACATCGGCCAACAGCATCTGAGGTGCTTAAGCACCCTTATTTACAGCCTTATGTGGATCAATACCGTCCAGCTTTCAGACCTCCATCAACCTGTTCTCCTGAAAAATCAATTTCTACTGTCAACTATCCTCGAAAAAACATGGCTGAAAGTCAAAACAGTAATAGTTCCAACAGTGATAAAGATAGTTTGATGTCAAATGAGAAAAACTTTGCAACAGCGGCATTACCGAAGTGTGATAACAAAGCCACTGAGATGGATCAAACATCTATCGATGATGATGTTTCAGAGGAAGAAAATGGCCCTGGTAATGCCAATGGCAATACCAAAACAGGTGAGCAAGAGGTGATGAAACCATCTCATAATGCACACCATTCTCATGTTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCCTTGAAAGAAGGAAAGGCTAGAGAAGCTACTTCTCCTATGAGAGGCAATCGCATAAAGCCTGGTGGTGTATCAACAACACAGAAAATAAGTACCGAGACACTGTCTAAATTGCCTAAGCCTAATTTTATTGTTCCTATTGTGAAACCTATGTTAGAGTCACCAACTATTTCACTTGCACGGGCAACCCCTGACTCTGCAAAAAAAATTCAGGGGTCACATCATTCAAAGCAACAGTTTCTGATGGTAGAAGCCTCACCAAAACTTAAAGCTAGACATGATTTGACTCCGCCACCTGCAGTTGTCAAACAAGTAGATGGAGATGTAGTTCCTCCCAAGCCAAGACAAAGAACTCCCCCAAGCTTACTTAGAAGACCTTCATTTTCGGGAAGAATGAGGCTGGCTGGAATTGATGTTCCAAATGCACCAAATGATACTGGAAAGCTAGGCACAGATAAAATAGTTCAGGAACATGAGATGAGCCCGTGTCAGCTGGCCAAAGACAATGTACCAAATTTTTCGAGACAGGTTACCAAAGAGCCTCAGAAGGTTTTTGAAAGAAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGCTTCATCTTCAGTTTCTATCCGAGGTGAACTTGCTGATGATGCTACAACTTTTATTGACATGAGAGAGCAGATGCTTCCTGTACATGTGAATGTAAGCCACATTGTAGGTGTGGAATCATGTCCTGACAGCAGCCCGCCGACAACTTGTGCACATTGTAAGATGGTTGAAAATGTTCCTAAAGATTCCTGTGAGATTGCCATGAATTTTCACAATACTATAAGTAGTAATGAGAAAGTGAATTCCAGTTTAAGTCTAGATCACCATGTTGAAGATTCTGAGGTAACACTTGCTTCAGAAGGTGGTCTTCTTAAATCCCAGACAACTATGTCTACTACATCCGGCTGTGATAATGGATCTGTTGATCCCTCTGCTGGAGCCACCAAAGAAATCAAAGATTTTCAAGATATTACCAAGGAAATGCCTTTGGCCAAGAATACCCAACGCGCACCCACAAGTTCTGGAGAAAAGTCTGCTCATGTAGAAGTTAGTCCAGAAAGTGAACCTGATCTATTTGTTCAGCCAGCACCTGGATGTAAGTCCCCTGGTGATGACAAATTCACTGTGAGGGAGCGACTGTCACCTGTGGTTGAAACGGTTCCTCTGGTTACCCCTACTAAATTATCAAACCAGAAAGTTTTGCAAGAGAAAGGAACTGTGCTGCAGAATCCACCAGAAAGGCCTGATACTGGTCATCTTCCTCCAGCCTTTGACGAAGTTATCCATGTCATACGCCATAGTAGTTACCGTGTTGGCAGCGATCAGCCAGTAAAGGAATCGGTAGAGATGGGAGTTCAAAATGTAGATGTTGGTAAATTTATCAATGTTGTGAGGGATGATTTAGAAATGAGGAACATAACGTCACCTTTGACACTCAAATCTTCAAGTTGCTCTGATGTTCCAAGCTTGAAATCTGATCAGTTGGAAATGAAAAACTTAAACACTCCTCCCATCCTTAAATCTTCAAGTTTCTCCGATTCTTCCAGCATGAAATCAAGCAATTCTGATCATCCTGGTCTTAAGGAACAAGATGTGAGTAACCCTCCTCCTCTAGTGTCAGAACCTGAATCTACTGAGCTCAGTAAAAGTAACACTCCTGTGAATGAAGAGAAACTACCAGCAAAGGAAACATTGGATGTGAAATCTTTCAGACAGAGAGCAGAGGCACTTGAAGAGCTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAACAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGAGGACGCTCTTCATAA 3105 0.4235 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPAFRPPSTCSPEKSISTVNYPRKNMAESQNSNSSNSDKDSLMSNEKNFATAALPKCDNKATEMDQTSIDDDVSEEENGPGNANGNTKTGEQEVMKPSHNAHHSHVESKQPKTIRNIMMALKEGKAREATSPMRGNRIKPGGVSTTQKISTETLSKLPKPNFIVPIVKPMLESPTISLARATPDSAKKIQGSHHSKQQFLMVEASPKLKARHDLTPPPAVVKQVDGDVVPPKPRQRTPPSLLRRPSFSGRMRLAGIDVPNAPNDTGKLGTDKIVQEHEMSPCQLAKDNVPNFSRQVTKEPQKVFERSSKGMQTDSSNSASSSVSIRGELADDATTFIDMREQMLPVHVNVSHIVGVESCPDSSPPTTCAHCKMVENVPKDSCEIAMNFHNTISSNEKVNSSLSLDHHVEDSEVTLASEGGLLKSQTTMSTTSGCDNGSVDPSAGATKEIKDFQDITKEMPLAKNTQRAPTSSGEKSAHVEVSPESEPDLFVQPAPGCKSPGDDKFTVRERLSPVVETVPLVTPTKLSNQKVLQEKGTVLQNPPERPDTGHLPPAFDEVIHVIRHSSYRVGSDQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTLKSSSCSDVPSLKSDQLEMKNLNTPPILKSSSFSDSSSMKSSNSDHPGLKEQDVSNPPPLVSEPESTELSKSNTPVNEEKLPAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1012 1034 Coils Coil 971 997 - -
Pvu11g1012 1034 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 364 379 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 348 363 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 486 514 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 272 380 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 937 957 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 394 416 - -
Pvu11g1012 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Pvu11g1012 1034 CDD STKc_Nek 7 262 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 901 959 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 569 594 - -
Pvu11g1012 1034 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1012 1034 Gene3D Transferase(Phosphotransferase) domain 1 90 343 - -
Pvu11g1012 1034 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1012 1034 SUPERFAMILY Protein kinase-like (PK-like) 4 312 IPR011009 -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 901 928 - -
Pvu11g1012 1034 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1017 - -
Pvu11g1012 1034 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Pvu11g1012 1034 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 279 317 - -
Pvu11g1012 1034 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1017 - -
Pvu11g1012 1034 MobiDBLite consensus disorder prediction 575 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1012 Pvu-Chr11 10239827 10246887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1012 14 263 MAP Kinase Kinase Kinase AT1G53570 31.765 9.83e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pvu11g1012 Pkinase 7.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1012 K08857 - gmx:100818747 1654.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1248 5 34359972 34368173 Pvu11g1012 11 10239827 10246887 PCT