Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1007 ATGTCGGCCCCGCGCGCTCCCTCCGCCGCAGCCGCCACCGCCTCCTCCAATCCGCCCGATCAGATCATGCACTCCATGAAACGCCAACTACCCTTCTCCTCCATGAAACCGCCCTTCGCAGCCGCAGGAGACTACCACCGTTTCGCTCCTGACCACCGCCCCAGCCTCGACGCCGAAGCCGTGGTCGTCAAGACTCCCCAATTGAAGCGAAAGAGTGAAGCGGCTGATTTTGAAGCTGATTCTGGTGACAGGATGACTCCTGGAACCACTGAACCAGCTAATAGTCCTTTTCGTACACCTGTATCAGGAAAAACAGGGAAGGGTGGCAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGCTCTCCTTCTGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACTAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGAGAGGCTGATGATAATTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAACGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGAGCTCAGTGAAGATGAAAATAATGAGAGGATGCTTTTTGTTACTGAGGAAGATATAAAAAATTTGCCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCTCCTCATGGCACCACTTTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTTTCACCAAAATCACCACCAAGCCACAAAATCAAGCCAAAACACCAAAATCATGAACTTGGCTATGCACCAACCATTTCAGAGTTTACTACCTCTCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGATCCGCTTCAAGAAGATTACTGCATCACTCGCGAGAACACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTTGTCTTCTGCATCTAAACCTACTGGAGGTTGA 1359 0.4592 MSAPRAPSAAAATASSNPPDQIMHSMKRQLPFSSMKPPFAAAGDYHRFAPDHRPSLDAEAVVVKTPQLKRKSEAADFEADSGDRMTPGTTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDNFASLQAEVENLTMDERRLDEQIREMQERLRELSEDENNERMLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVSPKSPPSHKIKPKHQNHELGYAPTISEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYCITRENTSTPSHPSNVGEVLSSASKPTGG* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1007 452 Gene3D - 138 211 IPR036388 -
Pvu11g1007 452 MobiDBLite consensus disorder prediction 9 23 - -
Pvu11g1007 452 SUPERFAMILY "Winged helix" DNA-binding domain 144 207 IPR036390 -
Pvu11g1007 452 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Pvu11g1007 452 MobiDBLite consensus disorder prediction 87 115 - -
Pvu11g1007 452 CDD E2F_DD 220 326 IPR032198 GO:0046983
Pvu11g1007 452 PANTHER TRANSCRIPTION FACTOR E2FB 24 441 - -
Pvu11g1007 452 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983
Pvu11g1007 452 Gene3D - 216 326 - -
Pvu11g1007 452 Coils Coil 222 263 - -
Pvu11g1007 452 MobiDBLite consensus disorder prediction 1 115 - -
Pvu11g1007 452 Coils Coil 160 180 - -
Pvu11g1007 452 MobiDBLite consensus disorder prediction 427 452 - -
Pvu11g1007 452 PANTHER TRANSCRIPTION FACTOR E2F 24 441 IPR015633 GO:0000978|GO:0006357
Pvu11g1007 452 SUPERFAMILY E2F-DP heterodimerization region 222 326 IPR037241 -
Pvu11g1007 452 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
Pvu11g1007 452 MobiDBLite consensus disorder prediction 46 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1007 Pvu-Chr11 10137208 10143109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1007 21 451 E2F-DP Transcription Factor Family AT5G22220 54.737 5.33e-154 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pvu11g1007 E2F_CC-MB 2.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1007 K06620 - gmx:100819817 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1007 11 10137208 10143109 Pvu11g1007 11 10137208 10143109 ECH