Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0974 ATGCCTCGGGGGAAAGCAAATTCTTCATCAGCTGCTAAGCCATCTGACTCTGAGAAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCAGAGGAAGCAATGGAAGAAGAAATTGAGTATGAAGAAGTAGAAGAAGAAGTGGAAGTGGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGAGGAGGAGGACCCAGAGGAGGTAGAAGTAGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAGATTGAAGAAGTGGATGAAGATGATGCCATGCAAAACAATAGCAGTGATGAAGCAAAGGTGGAAGATGAGGATGAGAAGAAAAAACATGCCGAACTCCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGCGGCATTCCTCATGATGTCTCAAATGAGGATTTGAAATCTTTTTGCGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGCATCCCGGCGAGAACAAGGGATTTGGTTTTGTGACATTTAGAAGTGTGGATTTGGCTTCTAAAGCCATCGAGGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAAATGTTCTACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGTGGAAGATCTGAGGAAGATTGTATCCGAGATTGGACCTGGAGTTACTGGTGTGGAACTTGTCAAGGATATGAAGAACACCAACAACAACCGTGGCTTTGCTTTTATTGACTATTATAATAATGCATGTGCTGAGTATTCTAAGCTAAAGATGATGAACCCAACATTTAAGCTAGGTGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCGAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATAACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAATGTTAGAGTGCTCTCTGGCAAAGCCACAGTCTGATCAAAAGTCTGGAGTATCAAACACACAGAAGCCGGGACCAGGATTGCTTCCAAGCTATCCACCACATGTCGGCTATGGTTTTGGGGGTGCCTATGGTGCACTTGGTGCAGGATATCCTGCTCCAGGTCTTGCACAGCCCATGCTATATGGAGGAGGTCAAGGTCCCGCTGGAATGGCCATGATGCCCATGCTTTTGGCTGATGGACGAATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAGCGCCATCCTCACATCATAGAGGTGGCCGGAGTGGTGGCAGTGGAGGTGGCAACAGGAATGCTGGAAGTTCTAGTAAGGGAAGGCACAACAATGATGGTGGTCAAGGGCGCAGATACCGCCCATATTAG 1536 0.4525 MPRGKANSSSAAKPSDSEKPVESDEKVDFEEENDPEEAMEEEIEYEEVEEEVEVEEIEEEVEEEEEEEDPEEVEVEEEEEEEEEEEEEEEEEIEEVDEDDAMQNNSSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDVSNEDLKSFCERIGEVAEVRVMKGKHPGENKGFGFVTFRSVDLASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGVEDLRKIVSEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNNACAEYSKLKMMNPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQMLECSLAKPQSDQKSGVSNTQKPGPGLLPSYPPHVGYGFGGAYGALGAGYPAPGLAQPMLYGGGQGPAGMAMMPMLLADGRIGYVLQQPGMQPQAPSSHHRGGRSGGSGGGNRNAGSSSKGRHNNDGGQGRRYRPY* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0974 511 CDD RRM_SF 134 206 - -
Pvu11g0974 511 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 484 - -
Pvu11g0974 511 Gene3D - 213 293 IPR012677 -
Pvu11g0974 511 SMART rrm2_1 133 206 IPR003954 GO:0003676
Pvu11g0974 511 SMART rrm2_1 307 380 IPR003954 GO:0003676
Pvu11g0974 511 Coils Coil 38 99 - -
Pvu11g0974 511 MobiDBLite consensus disorder prediction 1 119 - -
Pvu11g0974 511 SUPERFAMILY RNA-binding domain, RBD 129 297 IPR035979 GO:0003676
Pvu11g0974 511 MobiDBLite consensus disorder prediction 485 499 - -
Pvu11g0974 511 MobiDBLite consensus disorder prediction 104 119 - -
Pvu11g0974 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Pvu11g0974 511 SUPERFAMILY RNA-binding domain, RBD 300 400 IPR035979 GO:0003676
Pvu11g0974 511 MobiDBLite consensus disorder prediction 382 404 - -
Pvu11g0974 511 Gene3D - 56 212 IPR012677 -
Pvu11g0974 511 SMART rrm1_1 133 206 IPR000504 GO:0003723
Pvu11g0974 511 SMART rrm1_1 213 290 IPR000504 GO:0003723
Pvu11g0974 511 SMART rrm1_1 307 380 IPR000504 GO:0003723
Pvu11g0974 511 MobiDBLite consensus disorder prediction 382 400 - -
Pvu11g0974 511 PANTHER RNA RECOGNITION MOTIF 1 484 - -
Pvu11g0974 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Pvu11g0974 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 294 IPR000504 GO:0003723
Pvu11g0974 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Pvu11g0974 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 375 IPR000504 GO:0003723
Pvu11g0974 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 275 IPR000504 GO:0003723
Pvu11g0974 511 MobiDBLite consensus disorder prediction 27 103 - -
Pvu11g0974 511 MobiDBLite consensus disorder prediction 463 511 - -
Pvu11g0974 511 Gene3D - 295 401 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0974 Pvu-Chr11 9675920 9681573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0974 134 468 Eukaryotic Initiation Factors Gene Family AT4G34110 24.800 4.12e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0974 K13161 - gmx:100806658 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0974 11 9675920 9681573 Pvu11g0974 11 9675920 9681573 ECH