Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0970 ATGTACACTCATCTCCAACATCAAGGAAAGAACATCCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGACATATGTTCCTTCACACGGGAAATGGATCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGGGGAGCTGACAAGGCAACTCCCAAAACGGTAATGAAACTCATGGGGATTTCAGGTCTAACTTTGTATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGTAAGAGTCTGCATGGACAAAGTAATAACGCGACACACAAAATCTGCATAAACCCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAACAATGGAACGCATGTGAACAATTTAAACCTTGCCCCTCAGTCTAATAACAAAGATTTACACATAAGCGAGGCACTGCAGATGCAAATAGAGGTTCAAAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTCCGGATAGAGGCTCAAGGAAAGTACCTTCAAGCTGTGCTAGAGAAGGCTCAGGAAACACTTGGTAGACAAAATTTGGGAGTAGTAGGACTTGAAGCTGCCAAACTTCAACTTTCAGATCTAGTGTCCAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTTAGAGATGAAGGAGTTGCAAGGATTTAGCCCTCACCAAACACAAACCAACCAGCCAAATGACTGTTCTATGGACAGTTGCCTCACATCTTGTGAGGTGTCACAAAAAGAGCAAGAGATACAAAATGGGGGGATGAGCTTAAGACCCTTCAATGTCCACACATTCATGGAACGAAAGGAGGTCATAGAGGGTCCCAATCTTAACAACCTACCAAACACTGACCTCAAATGGTGTGATCCAGTGAAGAACACCTTCCTCACCCCATTGAGCAGAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTAGAAGGAGAAACTGAGAATGGAAGCACCATTAGGAAAGAATCAGTGAAACCAGTGGCTGAGAAAGTTTCTCAAGATTATGGACTGCCTTCATTCTTTGCTGCACCAAAACTGGACCTAACCACTGAAGATAAGAACACTAGAAAGAGTTGTAAAGAACTGGACTTGAATGGATTCAGTTGGAACTAA 1185 0.4321 MYTHLQHQGKNIHSSSRMPIPSERHMFLHTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKSLHGQSNNATHKICINPGAATDERLRENNGTHVNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSDLVSKVSSQCLNSAFLEMKELQGFSPHQTQTNQPNDCSMDSCLTSCEVSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPNLNNLPNTDLKWCDPVKNTFLTPLSRRSPSNLSMSIGLEGETENGSTIRKESVKPVAEKVSQDYGLPSFFAAPKLDLTTEDKNTRKSCKELDLNGFSWN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0970 394 Pfam MYB-CC type transfactor, LHEQLE motif 150 196 IPR025756 -
Pvu11g0970 394 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Pvu11g0970 394 Coils Coil 152 172 - -
Pvu11g0970 394 Gene3D - 45 103 - -
Pvu11g0970 394 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Pvu11g0970 394 MobiDBLite consensus disorder prediction 327 346 - -
Pvu11g0970 394 PANTHER MYB-RELATED PROTEIN 2 4 394 - -
Pvu11g0970 394 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Pvu11g0970 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Pvu11g0970 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 394 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0970 Pvu-Chr11 9635541 9638552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0970 78 394 G2-like Transcription Factor Family AT3G04030 50.301 7.58e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu11g0970 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0970 - - gmx:100805237 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1281 5 34763098 34766035 Pvu11g0970 11 9635541 9638552 PCT