Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0958 ATGGAGTGCAATGTGGAGAACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAGCCATGTTCTTCTCCTTCATTTCTAAATTCCAACACAATATCTTCTTCTTCTTCTTCTTCATCATCATCTTCCTCTTTTTGTTTCACTCAGCATGAGCTTGTTCATGAAACCATCCAATTCTTGCCCATTTTAAGTGAAAGGGCCTCAAAAGATGAAGACCATCATAGAGTAGAAAGTTTTGAGGTGAAAGAGGAAAAAGTTGAACAAGTGACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGAGGTTGTTGATGATGAGAAGGTGATTTTCCATGTCAAGGAAGAAGAAGAATCCTCCAAGAGAAGCTTCCATGGATGCTCCTTTAACCAAGAGAGAAGGTTTTGGATTCCAACTCCAGCACAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGACTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGCTACTGCTGCGCTCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCCAAGCCTTTGAAGGACTTTAGAACCCTCCAAACCCATTACAAAAGAAAGCACGGCACAAAGCCCTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCCCTTAAGGACCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATTAGTACTGGCTCTGATGAAGATGAGGTTAATGCTCATCATGCATGA 972 0.43 MECNVENNKNLYLHAPTFIEWLKPCSSPSFLNSNTISSSSSSSSSSSSFCFTQHELVHETIQFLPILSERASKDEDHHRVESFEVKEEKVEQVTVALHIGLPDSAKRHHEVVDDEKVIFHVKEEEESSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECISTGSDEDEVNAHHA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0958 323 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Pvu11g0958 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 262 IPR013087 -
Pvu11g0958 323 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 6 320 - -
Pvu11g0958 323 Gene3D Classic Zinc Finger 238 296 - -
Pvu11g0958 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Pvu11g0958 323 SMART c2h2final6 205 237 IPR013087 -
Pvu11g0958 323 SMART c2h2final6 242 262 IPR013087 -
Pvu11g0958 323 SMART c2h2final6 158 180 IPR013087 -
Pvu11g0958 323 SUPERFAMILY beta-beta-alpha zinc fingers 227 262 IPR036236 -
Pvu11g0958 323 Gene3D Classic Zinc Finger 157 180 - -
Pvu11g0958 323 SUPERFAMILY beta-beta-alpha zinc fingers 149 181 IPR036236 -
Pvu11g0958 323 PANTHER ZINC FINGER PROTEIN WIP2 6 320 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0958 Pvu-Chr11 9460420 9463816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0958 4 311 C2H2 Transcription Factor Family AT1G08290 55.942 1.17e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g0958 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0958 - - gmx:100802773 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1290 5 34880007 34883717 Pvu11g0958 11 9460420 9463816 PCT