Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0952 ATGTATAGCAATTTCAAAGAACAAGCAATAGAGTACGTGAAGCAAGCGGTGGATGAAGACAACAAAGGTAATTACGCCAAAGCGTTCCAACTTTACATGAACGCGTTGGAGTACTTCAAAACGCACCTCAAGTATGAGAAGAACCCTAAGATCAAGGAGGCAATCACGCAGAAATTCACCGAGTACCTGCGTCGGGCCGAGGAGATCCGGGCCGTTCTCGACGATGGGCCTAGCGGCCCACCTTCTTCCGGGGATGCTGCCGTCGCGACCAGGCCCAAGACCAAGACCAAGCCCAAGGACGGCGCAGGCGGTGACGGAGAGGATCCTGAACAGGCCAAGCTCCGGGCCGGGCTCAACTCCGCCATCGTTAGGGAAAAGCCCGACGTGAAGTGGAACGACGTGGCGGGGTTGGAGAGCGCCAAACAAGCTCTTCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCTCAGTTTTTCACCGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCACCGGGGACGGGTAAATCGTATTTGGCCAAGGCTGTTGCAACAGAAGCTGATTCTACGTTCTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCGAAATGGCTCGTGAAAGTGCACCATCTATCATATTCATTGATGAAATAGATTCTTTGTGTGGTCAGCGTGGAGAGGGTAATGAGAGTGAGGCTTCAAGACGAATTAAAACTGAAGTTCTGGTTCAGATGCAGGGTGTAGGACACAATGATCAGAAGGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGACGTTTTGATAAGCGAATATACATACCCCTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTTCACCTAGGAGATACTCCCCATAATTTGACCGAAAGCGATTTTGAACATTTGGCTCGCAAGACAGGGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATTCTGAGGGTATGTGGATTCCATGTGGAGCAAAGCAACAAAGTGCAATACAAATTACAATGCAGGAGCTTGCTGCGAAAGGACTTGCTTCACAGATCCTGCCACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGGCCGACCTCGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA 1308 0.4786 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPPSSGDAAVATRPKTKTKPKDGAGGDGEDPEQAKLRAGLNSAIVREKPDVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTEVLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTGGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNSEGMWIPCGAKQQSAIQITMQELAAKGLASQILPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0952 435 MobiDBLite consensus disorder prediction 71 111 - -
Pvu11g0952 435 SMART smart 2 79 IPR007330 -
Pvu11g0952 435 ProSitePatterns AAA-protein family signature. 270 289 IPR003960 GO:0005524|GO:0016887
Pvu11g0952 435 PANTHER AAA DOMAIN-CONTAINING 1 435 - -
Pvu11g0952 435 MobiDBLite consensus disorder prediction 92 111 - -
Pvu11g0952 435 CDD MIT_VPS4 4 76 IPR045253 -
Pvu11g0952 435 Pfam ATPase family associated with various cellular activities (AAA) 169 298 IPR003959 GO:0005524|GO:0016887
Pvu11g0952 435 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 435 - -
Pvu11g0952 435 Gene3D - 6 75 - -
Pvu11g0952 435 Pfam Vps4 C terminal oligomerisation domain 368 432 IPR015415 -
Pvu11g0952 435 Gene3D - 127 423 IPR027417 -
Pvu11g0952 435 Gene3D - 300 415 - -
Pvu11g0952 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 430 IPR027417 -
Pvu11g0952 435 SUPERFAMILY MIT domain 2 83 IPR036181 -
Pvu11g0952 435 SMART AAA_5 164 300 IPR003593 -
Pvu11g0952 435 CDD AAA 135 298 - -
Pvu11g0952 435 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0952 Pvu-Chr11 9389461 9396895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0952 163 356 Calmodulin-binding Proteins AT3G56690 36.735 5.33e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0952 K12196 - gmx:100801165 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0952 11 9389461 9396895 Pvu11g0952 11 9389461 9396895 ECH
Pvu5g1293 5 34908608 34914866 Pvu11g0952 11 9389461 9396895 PCT