Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0940 ATGGCGTCAGAGAGCACAGTGACTTCAAACTCCACCGATGGTGAACGACCAAAGGTGGTTGTCATAATGGGACCCACAGCTTCCGGAAAGTCGAAGCTTGCCGTTGATTTAGCTTCTCACTTCCCTGTCGAAGTCATCAACGCTGATTCCATGCAGGTCTACCGCGGCCTCGATGTTCTCTCCAACAAACTCCCTCTCTCTCACCAAAACGGAGTGCCGCATCATCTCTTGGGCACTGTAAGCCCCAACGTGGAATTCACGGCTAAAGCGTTTCGGGATTCCGCTATTCCCATTATTGATGACATATTGGCTCGCAATCGTTTGCCTGTTGTAGTTGGAGGTACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTCTAGATGATTCTGCAGAAGATATGGATGAAAGCTGTTTGGGTGACCCACCTGGCATCACGCAGTCTGAGAACAGTTTCCCTGCCGAAAATGATGGTTCAAGCTATGGTTATGATCTGCTCAAGGATATTGATCCAGTTGCTGCTAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTAGTTTGTACACTCGCACTGGTGTTCCTCCTAGTAAAGTTTTTCAAGGGAAGGCGGCAGAGAATTGGGGTCAAGTTGACAACTTAAGATATGATTGTTGCTTTGTATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTAGAGCAGAGGGTAGATTGCATGATGGAAGATGGATTACTCAATGAAGTCTATGACATTTATAATTTGAATGCAGATTATACTAGAGGTTTGCGACAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTGTGTTGTCAAAGACATGTATGAAAGAGAGAGGGATTTGACTGAAGGATCCAGCATAGAAAAGGGCAAGACGTTGTTTAATGGTAATTTGGTGGAGTTGGTGAGATCTTCCTCTGATACTGAATCCACAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTCAATACCAGGAGACTTGTTCGCCGACAGAAGAGGATGCTCAGTCGACTGCAAACATTGTTTGGTTGGAACATACACTTTGTTGATTCCACAGCACCAATATCAAGCAAATCAGAAGATGTATGGGCACGCCAAGTAGTTGAATCTGCTGTGAAGATAGTTAAATCTTTCTTGAGTGGGAACGGAAGCTTCTCATCCACCTTTGGGACTTCAAATGACACAGGGATGAAAATAATCCAAAGGGACCTCTGGACTCAATACGTATGCAAGGCGTGCGGAGATCGGGTTCTTAGAGGATTACATGAATGGGAACAACACAGACAAGGTCGAGGGCACCGAAAACGTATTTCAAGTCTTAAGAGCAAGGGTCAATTTCCTGGTTTCGTGGAACAGAAGGTGGAATATTCTCAGTGTGAACAGTGA 1434 0.4407 MASESTVTSNSTDGERPKVVVIMGPTASGKSKLAVDLASHFPVEVINADSMQVYRGLDVLSNKLPLSHQNGVPHHLLGTVSPNVEFTAKAFRDSAIPIIDDILARNRLPVVVGGTNYYIQALVSPFLLDDSAEDMDESCLGDPPGITQSENSFPAENDGSSYGYDLLKDIDPVAANRIHPNNHRKINQYISLYTRTGVPPSKVFQGKAAENWGQVDNLRYDCCFVCVDASLPVLDRYVEQRVDCMMEDGLLNEVYDIYNLNADYTRGLRQAIGVREFEPLLRTCVVKDMYERERDLTEGSSIEKGKTLFNGNLVELVRSSSDTESTILLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWNIHFVDSTAPISSKSEDVWARQVVESAVKIVKSFLSGNGSFSSTFGTSNDTGMKIIQRDLWTQYVCKACGDRVLRGLHEWEQHRQGRGHRKRISSLKSKGQFPGFVEQKVEYSQCEQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0940 477 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 397 IPR039657 -
Pvu11g0940 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 261 IPR027417 -
Pvu11g0940 477 Gene3D - 145 207 - -
Pvu11g0940 477 Hamap tRNA dimethylallyltransferase [miaA]. 19 389 IPR018022 GO:0008033
Pvu11g0940 477 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 397 - -
Pvu11g0940 477 TIGRFAM miaA: tRNA dimethylallyltransferase 19 291 IPR018022 GO:0008033
Pvu11g0940 477 Pfam IPP transferase 52 349 - -
Pvu11g0940 477 Gene3D - 17 418 IPR027417 -
Pvu11g0940 477 Gene3D Classic Zinc Finger 419 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0940 Pvu-Chr11 9161106 9164821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0940 22 471 C2H2 Transcription Factor Family AT2G27760 55.850 4.94e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0940 K00791 - gmx:100792690 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0940 11 9161106 9164821 Pvu11g0940 11 9161106 9164821 ECH