Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0939 ATGGACATTGAGAACAACGAATCTCCTTGTTCCACTTCACTGTCTCCACCAAACCCTAATCCACAACCCAGCAATGCTAATCCATCTCACAAGAGGAAAGCAGGTAGAAAGAAGTTTAGGGAGACGCGGCACCCTGTGTATAGGGGTGTACGCCAAAGAAACGGCAACAAATGGGTGTGTGAAATTAGGGAACCAATAAAAAAATCAAGGATTTGGGTAGGCACATACCCCACTCCTGAAATGGCTGCTAGGGCACATGACGTGGCTGTCTTAGCCCTTAATGGCATCTCTGCTAACTTCAATTTCCCGGATTCTGTTTCCCTTCTCCCCCTTGCAAAGTCTTGTTCTGCTCCAGATATAAGGGAAGCAGCAAAAGCTGCTACTCTTGATCAGGCTTTCATACCAATACCAAACACTGCCTTTTCTTCTTCCTCTCATGGCAATTCTAATTTTGAAGAAAATGGGAATGGTGAAGACAGTTGTTTGAGCATCAGCATGCAGAATGATGAGTCTGAAACAGTGTTCTTTGATGAGGAGGCACTGTATAATATGCCAGGTCTGTTGGATAGTATGGCAGAGGGTTTACTAATTACTCCACCCTCTACCAAAACAGCTCTGGACTGGGATCATATAGGTTCTGAAATAGACCTTACTCTCTGGAATAACTAG 669 0.4439 MDIENNESPCSTSLSPPNPNPQPSNANPSHKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEIREPIKKSRIWVGTYPTPEMAARAHDVAVLALNGISANFNFPDSVSLLPLAKSCSAPDIREAAKAATLDQAFIPIPNTAFSSSSHGNSNFEENGNGEDSCLSISMQNDESETVFFDEEALYNMPGLLDSMAEGLLITPPSTKTALDWDHIGSEIDLTLWNN* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0939 222 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Pvu11g0939 222 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 11 221 - -
Pvu11g0939 222 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Pvu11g0939 222 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Pvu11g0939 222 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Pvu11g0939 222 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Pvu11g0939 222 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 221 IPR045277 GO:0003700
Pvu11g0939 222 MobiDBLite consensus disorder prediction 30 44 - -
Pvu11g0939 222 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Pvu11g0939 222 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Pvu11g0939 222 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Pvu11g0939 222 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0939 Pvu-Chr11 9148323 9148991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0939 5 221 AP2-EREBP Transcription Factor Family AT4G25470 44.037 5.12e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu11g0939 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0939 - - gmx:100793751 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0939 11 9148323 9148991 Pvu11g0939 11 9148323 9148991 ECH
Pvu5g1305 5 35040940 35041680 Pvu11g0939 11 9148323 9148991 PCT