Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0918 ATGGAGCAACAGAATCTTTCAGACACCGATCAGTTTTTGACTCTGGGCGCCACATCGGACGAGTCACAGAGTCCTAAGGAACCAGTGACGCATGTCAACGCCGCCGCAGACAATAACAACAATGTTGTTAGCACAGTCAATGTTGCAACTGGTCCTGGTTCTGGTTCTGAGCTTGTTGTGGCCGTACCAAACTCCGAGGCTGTAGGTTCGGGATTGGTGGTGAAGCGAGGAAGGGGGAGGCCGAGGAAGCATGAGGCTGTCGGGAACACGGCGTCTCCGTTGTCGGCGGTGACGCCGGCGCCACCAGGATTTTCCAATCAGACCAAGAGAGGCAGGGGACGCCCTCGTGGTTCTGGGAAACTGCAGGCTATGGCTTCCATTGGTGGGTTTATGCAAGAAACAGCAGGGGGAAACTTCATACCTCACGCACTGAGTGTGCAAATTGGAGAGAATTTGGTAGGAATGATAATGTCCTTTTTTGAGAAAAGCCCGCTATCAGTTTGCATACTTTCTGCTACTGGTGCTATTTCAAATGTGACCATTCGTGGATCTAATCATATTATGAGACTTGAGGGTACCTATGAGATATTGTCTTTATCAGGAACTTCTACCTTCACTTGTGGCATTAATGGTCCAGTTCGTACAATTGGATCATTGAGAATTTCAATGGCTAAATCTGATGGAAATGTTTTTGGGGGAACCCTTGAGAGTGCATTGGTAGCAGGTTGCCCTATTCAGCTTGTTATGGCCACTTTCAAGCAAAACATGAATACTCAAATCAAGAGAAAACAATTGTTTGGATTTTCTAATGTCCCCCTTATGCTGGAAAGTCCAGATTCAGAAAGGGGTAAAATGAAAGTTCCAAAGTGGACAGAAGGTGAGAAGAGTTGTTCTTCACCACCACCAACAGGACTTGAAGCAACAACAATACCTGATTGTGTAGCAGAGAATGTGTTTTCTGCCACACCTAATGGAGGAACAGATAATGGTATTACTCCACACAATGTGCATTCTGCATGTTTTATTGGTGTTGATATGGACAACCAGGCTCCACAGTCTGCATCAGATGATTCAGATCAGAAGACTTCTGCAGACGAGAATGCAAATGTTATAGAATTATGA 1122 0.4572 MEQQNLSDTDQFLTLGATSDESQSPKEPVTHVNAAADNNNNVVSTVNVATGPGSGSELVVAVPNSEAVGSGLVVKRGRGRPRKHEAVGNTASPLSAVTPAPPGFSNQTKRGRGRPRGSGKLQAMASIGGFMQETAGGNFIPHALSVQIGENLVGMIMSFFEKSPLSVCILSATGAISNVTIRGSNHIMRLEGTYEILSLSGTSTFTCGINGPVRTIGSLRISMAKSDGNVFGGTLESALVAGCPIQLVMATFKQNMNTQIKRKQLFGFSNVPLMLESPDSERGKMKVPKWTEGEKSCSSPPPTGLEATTIPDCVAENVFSATPNGGTDNGITPHNVHSACFIGVDMDNQAPQSASDDSDQKTSADENANVIEL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0918 373 PANTHER DUF296 DOMAIN PROTEIN 38 359 - -
Pvu11g0918 373 CDD DUF296 141 252 IPR005175 -
Pvu11g0918 373 MobiDBLite consensus disorder prediction 1 28 - -
Pvu11g0918 373 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 253 IPR005175 -
Pvu11g0918 373 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Pvu11g0918 373 SMART AT_hook_2 75 87 IPR017956 GO:0003677
Pvu11g0918 373 MobiDBLite consensus disorder prediction 277 304 - -
Pvu11g0918 373 MobiDBLite consensus disorder prediction 91 105 - -
Pvu11g0918 373 MobiDBLite consensus disorder prediction 76 120 - -
Pvu11g0918 373 MobiDBLite consensus disorder prediction 347 373 - -
Pvu11g0918 373 PRINTS AT-hook-like domain signature 75 85 IPR017956 GO:0003677
Pvu11g0918 373 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Pvu11g0918 373 Gene3D - 141 269 - -
Pvu11g0918 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 359 IPR039605 GO:0003680
Pvu11g0918 373 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 258 - -
Pvu11g0918 373 ProSiteProfiles PPC domain profile profile. 136 274 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0918 Pvu-Chr11 8771584 8774834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0918 74 252 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 38.830 8.60e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0918 - - gsj:114378162 414.461