Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0917 ATGGAGGCGCCCGTAGCGAGACCGAGGGGGCGCCCGAGGAAGAGGAGAAGAAATGATGAGGAGAATGAGACCGAAGCAAAGAAGCAGGCGTCCACGGGGACGCGTCCCGTGGCTTTAGTCGGAAGGTACGTTTTGAAAAATTTTCCCAGGAACGGAGTGTTCCTAGGAAAAGTAGTGTACTACGAGAGCGGTCTATATAGAGTTTGTTACGAGGATGGCGATTCCGAGGACCTCGACAGTGGTGAGGTCCGGACTATACTGGTAAAAGAGGGTGGAATGGATGGTGATTTAGCGCGGAGGAAGGAGAAGTTAGAAGAATTGGTGTCACTGAAGAGACCAATTGAATCCATTAAGGAGGAATCTAGGGCTGGATTGTGTGAATTGAAGGATGGTGGATTGATGATTGAGAAAGATGAGGAAGAAGATGAGGAGGAGGAGGATGGGGATGTCAATTCTTCGAGTGATTCTGGCACTGGCCTGGGAATGGCTTCTGGTGCTGAGGCTGAGACCCTGCCACCACCACCCGAGTTGCCAGTGTCATCAGGTACTGTCGGGGTTCCTGAACAATGTGTCTCACTGGTATTCTCTGTATATGGATTCCTGAGGTCCTTTAGTATACGGTTGTTCCTACAGCCGTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACAAATTCACTATTTGATGCAATTCATCTGTCGCTGATGAGAGTTTTGAGACGGCACCTTGAATTCCTCTCATCAGAGGGCTCAGAGCGGGCTTCAAGATGCCTAAGGTGCAATGAATGGAGCTTGCTGGATCCAGTGACATGGCCAGTCTTTCTTTTACAATATTTGGTAGTCAGTGGACACACAAATTCTCATGAGTGGGAAGCATTTTACAAAGAGGTGTCCACTGTAGAATATTATGTACTTCCTGTCAGTAGGAAGCTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGAGGATATTTTAAATGAAATGAACACTCGGAGAGAATCTGAGGTTGGGATGGATTATGATGGAGAAGATATCCTTCCTACAGAATTTGGGGTTAGAAGAGTCGAGCCAAGATACACCTATACTTCAGCGTGTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTTTATTTCATATTCCAGACATACAGAAAGTACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTCGGAGCCAACCATTGCAAAGGGAACAACACTTCGAGGAGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGAACTTGTGAACATCTACTTGTGCTGAATATTGGCAGTGCCGAATCTTGTCTTAGATACTACAATCAGAATGACATTCCCAAAGTTCTCCGAGTGGTTTATGCATCCATGCAGCACAGACCAATATACCATGATATTTGCATGGCAGTGCTACAATATTGGAGTGTTCCAGAAAGTTTGTTGTTTCATTCTGTTTCAAGTGGAGCAAATGTGAACTCAGCAAATAGAAAGGAAGAGACAAAGTCATCTTCTTTTTTACTTCCTCCTTTGGGTGAAGGCAATTTGATGAAGGAAGAGTATCCTTTAACCTCTGTCAGTACGACTTACTGTGACAATAAGGTGCCATCTCTAGATGCTTCATCAGTTTCCAGCCAAAGTTCTGCTCTTCAGTGTAATGGCAATGGTAGCAGTATTGAGTGCCTTGTTGTGACTACAAAGCTTCCTGAGGACAGTAGGATGGAATCCATCCTCTCAGCTGATTCTGCTTCTGTTTCTGTTAGTTGCCATTCCAATATGAACCATGGAAATTTTGATGATAGGCCAACAGTGGTAGATCCTGGCAAGTGCTCTTTGGTAAATAGTCAATTTAGTTATTATGGCCATGCAAATGATACAGGGTGTCCTATAAATATTTCATTCCAAACCAAAGAAAGCACTCCAGCCACTTTTGAAAAGTGTGAACGCAATGTAACCAATGGTTTTGCCTACATGGGTTTCTCCTATAAGCCTTTGTCGTACATGAATTACTATATACATGGTGAATTTGCTGCATCAGCTGCTGCTAAATTTGCCCTTCTTTCGTCAGAGGAATCTAGGTCAGAGGGCCATGTGTCAGACAATCAGAGGAAATTGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCATTATCTGCTTCTCGTTTCTTTTGGCCAAGTTCTGAGAAGAAGCCTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCATTTCTTGCAAAGCGCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTATAAAAGTGCTTGCTGGTTTTTCTCCTATAAGAAGTGTGGAGGGAGTACTCCCTAGTATCGCAACCTACATTATATACATGGAGGAATGTTTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTTCAATCTACAGGAGGCAATGGCGTAAGCGTGTGGAACAGGCCACAACATTTAGTGCTATCAAACCACTTTTACTTGAACTTGAGGAGAACATTAGGACAATTTCTTTCTGTGGGGACTGGGTTAAGCTGATGGATGACTGGTTGGTTGAGTTTTCCATGGTACAAAGTGCCACATCTTCTCTTGGAACAGCACAGAAGCGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGATGAAGCTCCAACTGATGGTTGCCCTGAAAGCTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCGATCTTGCCAAAATCCATGGTCAGAAAAGCAGCACGGCAAGGTGGTTCAAGAAAAATTTCTGCCATTTCTTATGCTGATGGCATTGATATCCCTAAAAGAAGTAGACAACTTGTTTGGAGAGCTGCTGTAGAAATGAGTAGGAATGCATCCCAGCTCGCACTTCAGGTCAGATATCTGGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAATATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATGTTTGCGACACTAAACTGGTAGAGGGGAAAAATCGTTATGGGATAGCTTTTGGGAGTCAAAAACATCTTCCTTCTCGGGTGATGAAAAGTGTTATTGAAATAGAGCAAGATCCTGAAGGAAAGGAGAAGTATTGGTTTTCTGAAGCACGAATTCCTCTATATTTGGTAAAAGAGTATGAAGAAGGTAAGGGAAACATGCCATATAATGAAGAGCAGCACTTGAATACTGCATCTGGGTTGCATAAAAAGCGGTTGAAAGCTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTAGGGATGCTACCAAGTGTAATGCATGCCAAGGTACGTAA 3618 0.4356 MEAPVARPRGRPRKRRRNDEENETEAKKQASTGTRPVALVGRYVLKNFPRNGVFLGKVVYYESGLYRVCYEDGDSEDLDSGEVRTILVKEGGMDGDLARRKEKLEELVSLKRPIESIKEESRAGLCELKDGGLMIEKDEEEDEEEEDGDVNSSSDSGTGLGMASGAEAETLPPPPELPVSSGTVGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLFDAIHLSLMRVLRRHLEFLSSEGSERASRCLRCNEWSLLDPVTWPVFLLQYLVVSGHTNSHEWEAFYKEVSTVEYYVLPVSRKLMILQILCDDVLESEDILNEMNTRRESEVGMDYDGEDILPTEFGVRRVEPRYTYTSACEDKEATKFVSASNAVNQPGSFISYSRHTESTEDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMSEPTIAKGTTLRGAEIFGKDLYGQLFMGTCEHLLVLNIGSAESCLRYYNQNDIPKVLRVVYASMQHRPIYHDICMAVLQYWSVPESLLFHSVSSGANVNSANRKEETKSSSFLLPPLGEGNLMKEEYPLTSVSTTYCDNKVPSLDASSVSSQSSALQCNGNGSSIECLVVTTKLPEDSRMESILSADSASVSVSCHSNMNHGNFDDRPTVVDPGKCSLVNSQFSYYGHANDTGCPINISFQTKESTPATFEKCERNVTNGFAYMGFSYKPLSYMNYYIHGEFAASAAAKFALLSSEESRSEGHVSDNQRKLASGNTYLQAKAFSLSASRFFWPSSEKKPVEVPRERCGWCISCKAPASSKRGCMLNHAALSATKSAIKVLAGFSPIRSVEGVLPSIATYIIYMEECLRGLVVGPFLSSIYRRQWRKRVEQATTFSAIKPLLLELEENIRTISFCGDWVKLMDDWLVEFSMVQSATSSLGTAQKRAPSGRRYKKRSAIDEAPTDGCPESFVWWRGGKFTKFIFQKAILPKSMVRKAARQGGSRKISAISYADGIDIPKRSRQLVWRAAVEMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANVCDTKLVEGKNRYGIAFGSQKHLPSRVMKSVIEIEQDPEGKEKYWFSEARIPLYLVKEYEEGKGNMPYNEEQHLNTASGLHKKRLKAICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDATKCNACQGT* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0917 1205 MobiDBLite consensus disorder prediction 138 182 - -
Pvu11g0917 1205 ProSiteProfiles DDT domain profile. 188 248 IPR018501 -
Pvu11g0917 1205 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 2 1204 - -
Pvu11g0917 1205 CDD PHD2_CHD_II 414 455 - -
Pvu11g0917 1205 MobiDBLite consensus disorder prediction 1 33 - -
Pvu11g0917 1205 ProSitePatterns Zinc finger PHD-type signature. 414 455 IPR019786 -
Pvu11g0917 1205 SUPERFAMILY FYVE/PHD zinc finger 384 457 IPR011011 -
Pvu11g0917 1205 Pfam DDT domain 189 245 IPR018501 -
Pvu11g0917 1205 PANTHER PHD FINGER FAMILY PROTEIN 2 1204 - -
Pvu11g0917 1205 SMART PHD_3 413 456 IPR001965 -
Pvu11g0917 1205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 466 IPR013083 -
Pvu11g0917 1205 ProSiteProfiles Zinc finger PHD-type profile. 411 458 IPR019787 -
Pvu11g0917 1205 Pfam PHD-finger 414 456 IPR019787 -
Pvu11g0917 1205 SMART testlast3 188 248 IPR018501 -
Pvu11g0917 1205 MobiDBLite consensus disorder prediction 14 28 - -
Pvu11g0917 1205 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 291 334 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0917 Pvu-Chr11 8717232 8723770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0917 278 547 EF-hand Containing Proteins AT5G22760 49.091 6.73e-75 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pvu11g0917 DDT 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0917 - - pvu:PHAVU_011G089300g 2348.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1323 5 35261758 35269366 Pvu11g0917 11 8717232 8723770 PCT