Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0906 ATGTCTCGTCGAGGAAACCAATCCGATTCTAACCGTCCGCCGCACTCCACGGCTCCTTCTCCCGCTGCCGGAGGCCGGGGCCGTGGTCGTGGTCGCGGTCGCGGCCGCGGTGAACATTCCGCTCAAACAGCATACTCTGCTTCTCCTGCGCACACTTCATCTGCTGTTTCTCCGGCTCCTTCCACTGCCGCTCCTCCCCGTGCTGTGGCAGCCGTCCCTGCATCGGCGGCGCCTGGTCCATCCCTCCCTCCGACGGTTCAAGTCTCGCCGGCGCCAGTTTCTGGATCAGCGGCAGCGGTTGCTACGTCCGCGCAGTCTCTGGCGGCAGAATCTCTTAGTTCGACGCTCGAGAAGCAACTGACATTGGCTTCGTCGGCATCGTCGTCGTCGGCACCGTCGTCGTCAAAGGCTGTGCGATTCCCGGACCGGCCAGGAATAGGAAGAGCGGGAAAGAAGATCCAAGTGCGCGCGAATCATTTTCCAGTGCAAGTTCCGCAGATAGATATTTATCACTACGATGTAACGATCACTCCGGAGATCACTTCAAAGAAGATTTCCAGAGATGTTATCGGCTTGTTGGTCCAAGCCCACCGCCAATCTATCTTAGCAAATCGCTTGCCGGCGTATGATGGAAGAAAAAGTCTTTTTACATCTGGACCTTTGCCATTCGAATCTAAGGATTTTAAGGTCAAGCTGGGGGATGAGGATGAACCAGGGTCTTCTGCCACTCCTACATCTGCCAGAAAAAAGCGTGAACGGGAGTTTAGGGTCTCTATTCGATTTGCTACGAAGACTGACCTTCATCACCTTATTCAGTTTCTTGGTCGCAGTCAGTTGGACTGTCCACAGGAAACTATTCAGGCGCTTGATGTTGTTCTGCGGGCTACACCTTCTGAAAAGTTTGATGTGGTTGGGAGATCCTTTTTTTCTCCTGCATTGGGACCTAAAGGACCTTTGGGCAGTGGGACTGAATTTTGGCGAGGGTATTACCAGAGTCTTCGCCCAACTCAGATGGGCCTGTCTCTTAATATTGATGTGTCGGCGAGAGCATTTTATGAGGCTATTCCTGTCCTTGATTTCATTTTGAAGCATTTTAGACTCGATCCTCAAGGGCCTTTGCATGATCAGGATCGAGTTAAGATTAAGAGAGCTCTGAGAGGAGTCAAGGTACAGGTTAATCATGGACAGAATATCAGACGTTACAAAGTCTCTGCTGTCACAAAAGAACCCCTCAGAGGCTTAATGTTTACTCTTGATGACAATGGAACAAAATCCTCAGTTGTTCAGTATTTCCAAGAGAAATATAATATTTCTTTGCAGTATACACAGCTTCCTGCTCTTCAAGCTGGTTCCGACACCAAACCAATTTTTTTGCCTATGGAGCTTTGTACAATCGTGGCTGGACAGAGATATACCAAGAAACTGAATGAGGGTCAAGTAACTGCTCTTTTAAAGGCAACTTGTCAGCGTCCTCATGATAGGGAGAACTCCATCAGACAGGTTGTCAAGCAGAGCAATTTCAGTACTGACCAATTTGCTCGGGACTTTCAAATTCGAGTCAGGGAGGAACCAATATTGCTTGATGCTCGTGTCTTGCCTCCCCCTATGCTTAAATACCATGGATCAGGTGGCGAGTCACAGGTTCAACCAAGGATGGGTCAGTGGAATATGATTAATAAGAAAGTGATTATTGGCGGTACGGTTGAATATTGGACTTGCCTCAACTTATCTGGAAGAATATTCAGAGATCTTCCATTTCAACTTTGTCAGAATTTAGTTGAAATGTGTAACAGCAAGGGAATGCGTTTTAAAGGAACTCCTGTAGTGCCTATAACAACAGCTCCAAGTGGTCAAATAGAGAATGCTCTTAAGAACCTCCATAAGCGCTGTATGGAGGCCGGAGGACTTCAATTGTTGATCATTATTTTACCTGATGTCAAGGGGTCGTATGGGAAAATTAAGCGCATCTGTGAAACTGAGTTAGGAATAGTATCTCAGTGTTGTCAGCCTAATCAAGTGACGAAAATGAACAAGCAATATCTTGAAAATCTATCCCTCAAGATAAATGTGAAGGTTGGTGGTACGAACACGATATTGAATGATGCATTTGCGAATAGAATACCTCATGTCTCCGATACACCAACAATCATCTTTGGTGCAGATGTAACACATCCCCAACCAGGGGAGGACTCTAGTCCTTCTATTGCTGCAGTAGTGGCATCAATGGATTGGCCTTACGTAACAAGGTATAAAGGAGTTGTTTCTGCTCAGAAACATCGGGAAGAAATTATTCAAGATCTTTTCATTGAACGTGAAGATCCGGTGAAGGGAGTTGTACATTCAGGAATTATCAGGGATTTGTTTCGTGCTTTCCGGAATTCAACTAATCGAAAGCCAGAAAGGATTATATTCTACAGAGATGGTGTGAGCGAGGGCCAATTTAATCAAGTGCTACTTTATGAGATGGATGCCATAAGACGGGCCTGTAGCTCGTTACAAGCCGACTATTTACCACCTGTTACTTTTGTGGTGGTTCAGAAGAGGCACCATACTCGGTTGTTCCCTGCGGATCACAGAGCTCGTGATAGTACAGATAGAAGTGGAAATATAATGCCAGGGACTGTAGTTGACACAACCATATGTCATCCCCGGGAGTTTGATTTTTACCTGAATAGTCATGCTGGAATTCAGGGAACAAGCAGACCAACTCATTATCATGTATTGTTCGATGAAAATAAATTTACTGCTGATGAGTTGCAGATTTTAACCAATAATTTGTGCTATACGTATGCAAGATGTACTCGATCAGTTTCTATAGTTCCTCCCGCGTATTATGCTCATTTGGCCGCATTCCGTGCGCGCTATTACATAGAAGGCGATGCATCAGAATCTGGTTCTGCATCTGGAGGCAGGGGTGGTTTTGCCAACTTTGAGGTTAAATTGCCCTCGGTGAAAAGTAATGTCTCGGACGTGATGTTTTTCTGTTGA 2988 0.4612 MSRRGNQSDSNRPPHSTAPSPAAGGRGRGRGRGRGRGEHSAQTAYSASPAHTSSAVSPAPSTAAPPRAVAAVPASAAPGPSLPPTVQVSPAPVSGSAAAVATSAQSLAAESLSSTLEKQLTLASSASSSSAPSSSKAVRFPDRPGIGRAGKKIQVRANHFPVQVPQIDIYHYDVTITPEITSKKISRDVIGLLVQAHRQSILANRLPAYDGRKSLFTSGPLPFESKDFKVKLGDEDEPGSSATPTSARKKREREFRVSIRFATKTDLHHLIQFLGRSQLDCPQETIQALDVVLRATPSEKFDVVGRSFFSPALGPKGPLGSGTEFWRGYYQSLRPTQMGLSLNIDVSARAFYEAIPVLDFILKHFRLDPQGPLHDQDRVKIKRALRGVKVQVNHGQNIRRYKVSAVTKEPLRGLMFTLDDNGTKSSVVQYFQEKYNISLQYTQLPALQAGSDTKPIFLPMELCTIVAGQRYTKKLNEGQVTALLKATCQRPHDRENSIRQVVKQSNFSTDQFARDFQIRVREEPILLDARVLPPPMLKYHGSGGESQVQPRMGQWNMINKKVIIGGTVEYWTCLNLSGRIFRDLPFQLCQNLVEMCNSKGMRFKGTPVVPITTAPSGQIENALKNLHKRCMEAGGLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPNQVTKMNKQYLENLSLKINVKVGGTNTILNDAFANRIPHVSDTPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPYVTRYKGVVSAQKHREEIIQDLFIEREDPVKGVVHSGIIRDLFRAFRNSTNRKPERIIFYRDGVSEGQFNQVLLYEMDAIRRACSSLQADYLPPVTFVVVQKRHHTRLFPADHRARDSTDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENKFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDASESGSASGGRGGFANFEVKLPSVKSNVSDVMFFC* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0906 995 CDD PAZ_argonaute_like 354 466 - -
Pvu11g0906 995 MobiDBLite consensus disorder prediction 124 145 - -
Pvu11g0906 995 ProSiteProfiles PAZ domain profile. 355 467 IPR003100 GO:0005515
Pvu11g0906 995 Pfam PAZ domain 380 482 IPR003100 GO:0005515
Pvu11g0906 995 SMART DUF1785_2 302 354 IPR014811 -
Pvu11g0906 995 Pfam Argonaute linker 2 domain 493 539 IPR032472 -
Pvu11g0906 995 Pfam Mid domain of argonaute 550 628 IPR032473 -
Pvu11g0906 995 MobiDBLite consensus disorder prediction 1 91 - -
Pvu11g0906 995 MobiDBLite consensus disorder prediction 1 17 - -
Pvu11g0906 995 MobiDBLite consensus disorder prediction 231 251 - -
Pvu11g0906 995 SMART Piwi_a_2 638 958 IPR003165 GO:0003676
Pvu11g0906 995 CDD Piwi_ago-like 511 957 IPR045246 -
Pvu11g0906 995 Gene3D paz domain 349 471 - -
Pvu11g0906 995 Pfam Argonaute linker 1 domain 304 353 IPR014811 -
Pvu11g0906 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 69 976 - -
Pvu11g0906 995 SMART PAZ_2_a_3 359 492 IPR003100 GO:0005515
Pvu11g0906 995 MobiDBLite consensus disorder prediction 41 60 - -
Pvu11g0906 995 SUPERFAMILY PAZ domain 350 507 IPR036085 GO:0005515
Pvu11g0906 995 ProSiteProfiles Piwi domain profile. 638 958 IPR003165 GO:0003676
Pvu11g0906 995 Gene3D - 531 701 - -
Pvu11g0906 995 Pfam N-terminal domain of argonaute 151 293 IPR032474 -
Pvu11g0906 995 SUPERFAMILY Ribonuclease H-like 624 958 IPR012337 -
Pvu11g0906 995 Gene3D - 707 995 IPR036397 GO:0003676
Pvu11g0906 995 Pfam Piwi domain 639 957 IPR003165 GO:0003676
Pvu11g0906 995 PANTHER ARGONAUTE1 69 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0906 Pvu-Chr11 8581826 8587717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0906 30 995 Eukaryotic Initiation Factors Gene Family AT1G48410 55.106 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0906 K11593 - gmx:100799033 1389.02