Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0898 ATGCCTCATCTCCCTCACGCTAGTCATGCCACAAACGCTTCCTCGCCGCAAGTATCCTTAAGAAGTCCTCTGGAAGTGTCCATTCGTCCGATGTTCATTTCGAGCGTTGCCTACATCTTCCTTATCCTCTTCGTCGCCTTTTTCTTCATTGGATTTGTGTTTTTATACTTCCAAAAGCACTCCTCCTCGTGGAAATCTGAGTCTCGTGCCATCCACAAGTGTGTTTCATCGAATTTCGTGGCGTCGAAGTCTCTGATGGTGGTGGCGGAGACAGCGCTGCAAGGGGAATTACTGCTATTAAACAAGAACGTTCCGATGTCCACGTCCATGCCTCCTCTCCCTCACACTAATCATGCCACAAACGCTTCCTCGTCCCAAGTATCCTTAGGAAGTCTTCTGGAAGTGTTCATTCGTCTGATGTTCATTTCGACTGTTACCTACGTCTTCCTTATCCTCTTCGCCGCCTTCTTTTTCATCGGATTCGTGTTTCTATACTTTCAAAAGCACTCCTCCTCATGGGACTCTGAGTCCCGCACCATCCGCGAGCGAGTGTCGTCGAATTCGATGGCATCCAAGTCTCTAGCGGTGGTGGCGGAGACGGCGAGCGTTGCCTACGTCTTCGTCATCCTCTTCACCGCCTTCTTTTTCATCGGATTCGTGTTTCTCTACTTCCAAAAGCACTTCTCCTCGTTAGACTTCGAGCCCGGCGCCATCCGCGACGGTGGTAGCGGAGACAACAATCAGGGGGAGTGCACTATCTGTCTGGAAGAGGTTGGAAAGGGAGAGGTCATGAAGATGATTGTGTATTGCAGACACGTGTTCCACGCAGATTGCATTAACAGGTTGTTGGAGAAACAGGTGACGTGCCCCGTGTGA 876 0.5034 MPHLPHASHATNASSPQVSLRSPLEVSIRPMFISSVAYIFLILFVAFFFIGFVFLYFQKHSSSWKSESRAIHKCVSSNFVASKSLMVVAETALQGELLLLNKNVPMSTSMPPLPHTNHATNASSSQVSLGSLLEVFIRLMFISTVTYVFLILFAAFFFIGFVFLYFQKHSSSWDSESRTIRERVSSNSMASKSLAVVAETASVAYVFVILFTAFFFIGFVFLYFQKHFSSLDFEPGAIRDGGSGDNNQGECTICLEEVGKGEVMKMIVYCRHVFHADCINRLLEKQVTCPV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0898 291 ProSiteProfiles Zinc finger RING-type profile. 251 291 IPR001841 -
Pvu11g0898 291 PANTHER RING FINGER DOMAIN-CONTAINING 249 291 - -
Pvu11g0898 291 SUPERFAMILY RING/U-box 250 291 - -
Pvu11g0898 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 291 IPR013083 -
Pvu11g0898 291 Pfam Ring finger domain 250 291 IPR001841 -
Pvu11g0898 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 249 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0898 Pvu-Chr11 8455937 8458073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0898 119 291 Rapid Response to Elicitors AT3G05200 29.545 7.95e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0898 - K10664 pvu:PHAVU_011G087400g 546.969