Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0897 ATGGATTTCTCTTACCGTAGATTGTCACTATTGAACGAGGAAGTTCCAATATCCATGTTTATGCCTCCTCTCCCTCACTTTAATCACGCCATACACGCTTCCTTGCTACAAGTGTCCTTAGGAAGTCCTCTGGAAGTGTCCATTTGTCCGATGTTCACTTCGAGAGTTGCCTACGTCTTCCTCATCCTCTTCACCGCTTTCTTCTTCAAAGGATTCATGTTTCTCTACTACCAAAATCATTCCTCCTCCTCGTCAAACTCCGAGTCTGACACCATTCGTGAGCGAGTGTCGTTGGATTCGGTGTCGTCAAAGTTTCTGGCTGTGGTGGCGGAGACGACGAGGCAGGGGGAGTGCGCTATATGTGTGGAAGAGGTAGGAGAGGGAGAGGAGGTGAAGATGATTGTGTATAGCAGACATGTGTTCCATGCAGATTGCATTAATAGGTGGCTAGAGAAGCAGGAAGTGTTCATTCGTCTTGTGTTCACTTCGAGTGTTGCCTACATCTTCTTCATCCTCTTCACTGCCTTTTTCTTCATTGGATCTGTGTTTTTCTACTTCTAA 561 0.4617 MDFSYRRLSLLNEEVPISMFMPPLPHFNHAIHASLLQVSLGSPLEVSICPMFTSRVAYVFLILFTAFFFKGFMFLYYQNHSSSSSNSESDTIRERVSLDSVSSKFLAVVAETTRQGECAICVEEVGEGEEVKMIVYSRHVFHADCINRWLEKQEVFIRLVFTSSVAYIFFILFTAFFFIGSVFFYF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0897 186 Pfam RING-like zinc finger 117 146 IPR001841 -
Pvu11g0897 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 155 IPR013083 -
Pvu11g0897 186 SUPERFAMILY RING/U-box 117 155 - -
Pvu11g0897 186 PANTHER RING-H2 FINGER PROTEIN ATL2 59 152 - -
Pvu11g0897 186 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 59 152 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0897 Pvu-Chr11 8454278 8455488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0897 84 170 C3H Transcription Factor Family AT4G00305 28.090 2.28e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0897 - K10664 var:108339852 197.593