Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0896 ATGAATTTCTCTTACCGTAGATTGCTGCTACAGAACGAGGACGTTCCAATCTCCACATCCATGCCTCCTTTTCCTAACGCCAAACACGTCACAAACGCTTCTTCGCCGCAAGTGTCTTTAGGAAGTTCTCAGGTGTCCACTCGTCCGGTTTTCACCTCGAGTGTTGCCTACGTCTTCCTCATCCTCTTCACCACCTTCTTCTTCATCGGATTCGTGTTTCTCTACTTCCAACAGCACTCCTCCGCGTCGGACTCCGAGTCCCGCGCCATCCGCAGACGAGCGGCGTCGGATTCCGTGGCATCGAAGTCTCTGGCGGTGGTGGCGGAGACGGCAAGGCAAGGAGAGTGCGCTATATGTCTGGAGGAAGTGGGAGAGGGAGGGGCGGTGAAGATGATTGCGTACTGCAAGCACGTATTCCACGCAGAATGCATTGACAGGTGGCTGGAGAAGCAGGTCACGTGTCCAGTGTGCCGGTGCTGCTGCGAGAGATGTGGAGAGGTGGAGTCGGTGACAGTGAGAGGAGGAGAAGGAGAAGGAGAAGATACAGAAGTGATTTCCGTAACAAACTTCGATTAG 576 0.5417 MNFSYRRLLLQNEDVPISTSMPPFPNAKHVTNASSPQVSLGSSQVSTRPVFTSSVAYVFLILFTTFFFIGFVFLYFQQHSSASDSESRAIRRRAASDSVASKSLAVVAETARQGECAICLEEVGEGGAVKMIAYCKHVFHAECIDRWLEKQVTCPVCRCCCERCGEVESVTVRGGEGEGEDTEVISVTNFD* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0896 191 Pfam Ring finger domain 115 158 IPR001841 -
Pvu11g0896 191 SUPERFAMILY RING/U-box 115 162 - -
Pvu11g0896 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 158 IPR013083 -
Pvu11g0896 191 PANTHER RING FINGER DOMAIN-CONTAINING 31 170 - -
Pvu11g0896 191 SMART ring_2 116 157 IPR001841 -
Pvu11g0896 191 PANTHER RING-H2 FINGER PROTEIN ATL57 31 170 - -
Pvu11g0896 191 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0896 Pvu-Chr11 8449706 8450494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0896 51 185 Rapid Response to Elicitors AT3G05200 34.416 9.80e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0896 - K10664 pvu:PHAVU_011G087200g 322.013