Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0895 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGACTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGACCTGGTGAAGTACCTCTTGAGCAAAGGAGGGGGGATGGGTTGATTGCTGAGCTCTCACAGGAAGATAGATTGGATATCCAAGAGAGAGGGCAGGGACATGTTTTAGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAACGTGGTCACAGTCACAAAGTCAGAATGAGTTCCATGAAGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAACGTATCCAGAAGAAATAGTGGTTCAAGGAGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTAAGAATTATTCGGGAGTGGGTACAAACGAGTAGCCAGCAGAGAAGTGTTTCCTCTGGGGAAAACAGGGAAGAATCATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTAATGGACTCATCGTCAACCAGAATGGGGGCCAAAATGAGCTTTCACGGAGGGGCATACGTAAATTATGTGGCCGACAGGCTATGCTTGATATGCTTAAAAATGCTGAAAGAGAGAGGCAGAGAGAAATTGAGGACTTGTCCGTACATCGGGCTGTATCTCAATTCCCCTATCGCAACCGCATTCAGGCATTTCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTTGATAATAACAGGCCCCTTTCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGTAAACAAACTGTATCAGGTCTAAGGGAGGGATTTATCGCTAGAAAGGAGAACAGTGGTTGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATATTGATCTTAATACTAATGAACAAATGGGATCAAGCAGTTCACATTTGGTCCCAATTGTACATTCTGAACTGTCTGACCCTAATGACAGAGGAAGCGATGGTCTCAGGGTATCGGACAGCCAGAGCTGTGTACAAGGTGCCACATCTGAGAATCTAAATTGGCAAGAATCTATTGCTCAATTAGGAGATGGAATGAAGCATTTGCCTATTGAATCACTAGATTGTCAATCATCATTCAGTGCCAGTGTTGAAAGAGTGAACAACACCGAGCAAAATGTTGATGTGATGCCAACTGAATATAGTGCCAATGAAATTACCCAACAAAGCTTGCGAATTGAAGAATCACATCACAGTAATAACCAGGAATTCAGTGAGGTGCATATTGAGCATTCTCAGCTGGGTGATATAAATAGTATTGAAAACAATTCTTCAAATCATGATATTCATATGGATGGTAATGTTGTTGATGATGTAAATTGGAATGGATCTGGTGCTCTAGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGAGTGGTATCAGAATAATACCGAATGGAGAAATATAACCGAGGAAAATGCGGATGGTAATCAGCTCAGTAATTCGGCAAGTGAGTGGCCTGAAAACACTTCGGGAAATGGGGATGGAGAAAACTCTCATCTGCAAGAATCTCACGAAGCGTGGCAAGAAGATGGTAGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAGCGCTCCAGCTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCTAACCTCCTTCGCAGCAGTTTCCGGGATAGTCTTGATCAGTTAATACAATCATATGTTGTAAGGCAAGGTAATGCACACATTGACTGGGAATTGCAAGAAACAAACCCCTCATCTGACTCAGCAGAGCAGGACGTTGAACAGCAAAGTAGGGATCAAATTGTTCATCAGGAGGTTCCTGTTAATAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTGTGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTGAATGACTTGAGAATTGACATGGCTCGATTGCAGCAAAGGATGAATAACATGCAGAGAATGCTGGAAGCTTGTATGGATATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGAAGCCCTAAATCGCTCTGCTGATTCATCTGATGTACATGATTACGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCCGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAGGAAAAAATGTCCTATGTGTCAAGCTCCTGTGGTGGAGGTGATACGGGCTTACTCTATACAATAA 2589 0.433 MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVQGRPGEVPLEQRRGDGLIAELSQEDRLDIQERGQGHVLEDAVLGENESETWSQSQSQNEFHEDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSNVSRRNSGSRREWLGETEQERVRIIREWVQTSSQQRSVSSGENREESSAEIGTQIERVRNGLIVNQNGGQNELSRRGIRKLCGRQAMLDMLKNAERERQREIEDLSVHRAVSQFPYRNRIQAFLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFIARKENSGCSQATSNVSDTSSNVDIDLNTNEQMGSSSSHLVPIVHSELSDPNDRGSDGLRVSDSQSCVQGATSENLNWQESIAQLGDGMKHLPIESLDCQSSFSASVERVNNTEQNVDVMPTEYSANEITQQSLRIEESHHSNNQEFSEVHIEHSQLGDINSIENNSSNHDIHMDGNVVDDVNWNGSGALEVEQPEEAFENEGSEWYQNNTEWRNITEENADGNQLSNSASEWPENTSGNGDGENSHLQESHEAWQEDGSFQEAVENWLGGPSDHESAPAGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVVRQGNAHIDWELQETNPSSDSAEQDVEQQSRDQIVHQEVPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNDINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSEALNRSADSSDVHDYESPEDKSKWECVRKGLCCVCRESNIDSLLYRCGHLCTCSKCANELLQSRKKCPMCQAPVVEVIRAYSIQ* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0895 862 SUPERFAMILY RING/U-box 809 855 - -
Pvu11g0895 862 ProSiteProfiles Zinc finger RING-type profile. 810 849 IPR001841 -
Pvu11g0895 862 MobiDBLite consensus disorder prediction 546 582 - -
Pvu11g0895 862 MobiDBLite consensus disorder prediction 102 137 - -
Pvu11g0895 862 MobiDBLite consensus disorder prediction 17 39 - -
Pvu11g0895 862 Coils Coil 738 765 - -
Pvu11g0895 862 MobiDBLite consensus disorder prediction 193 208 - -
Pvu11g0895 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 860 IPR013083 -
Pvu11g0895 862 CDD mRING-HC-C3HC5_NEU1 810 848 - -
Pvu11g0895 862 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 862 - -
Pvu11g0895 862 Pfam Zinc finger, C3HC4 type (RING finger) 807 854 - -
Pvu11g0895 862 PANTHER PROTEIN, PUTATIVE-RELATED 1 862 - -
Pvu11g0895 862 MobiDBLite consensus disorder prediction 193 212 - -
Pvu11g0895 862 Coils Coil 244 271 - -
Pvu11g0895 862 MobiDBLite consensus disorder prediction 546 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0895 Pvu-Chr11 8441784 8446971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0895 810 856 C3H Transcription Factor Family AT3G06140 40.426 1.31e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0895 - - gmx:100801329 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0895 11 8441784 8446971 Pvu11g0895 11 8441784 8446971 ECH
Pvu5g1340 5 35481978 35487486 Pvu11g0895 11 8441784 8446971 PCT