Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0894 ATGGCGAACGATACAAATTCAGAAAACTTTGTTGAATCGTATGGGGTTCGCATTGGTTTAAAGAGAGAATTTAACTTTGCTATGAAGTCACAATCACAAATATGTGATTCTCTAGGTCGAACTCGGTCGAAAAAGGCCCAAAATTTGGTTCAGGTCTCTACCAATTCCTCTCACAGGCAATACAAAAATGGTGTTGCTTTAAACGAGAAGGAAGTAAAGAGTGATTTGGTGGATGCAAAGAAACTTAGTCAAGTGTGTGATGAAACAACAATGTTTGTTGTTAGTGAAAAGGAGCACAAGAGTGATGGAACTAAAAGCCAAGTGCAGAATGAATGTGAAAAGGAACACAAGAATGATGAACTCAAGACTGGGGTTATGCAAATGCAACCTGTTAGTGATAAGGTTAAGGAGGAAGGTGACAATAATGTGATTGTTCCAATTTTGGCTTGCCAGTTGGAAACCCCAATAAAGGCTGTACAATCAACATTGAAAAATTTAGAAAAAGGTGATAGCAATGTTAAGAGTAATGGTGTTGATAAAGAAAGAAATAATGGTTCTATTATTACTATTTCAATTCCGAGGACATCTTCTAAAGGTTTTATGGAAAAAAAGTTTCCTTCCAAGCTAAAAGACCTTTTATCTTCTGGGATTCTAGAAGGTCTACTTGTGAAATATGTTCGCAGCATCAAGGTTGTGTCACCCACAATTTTTGAGTTGCATGCTGGTAGTACAAACAAGCGTCCTCCGGAGTATATTTTTCTTGAGAATGGAAGTAGTCTTCGTGATGTCATGAATACATTTTTGAATATTCCATTAGACACTTTAGAGGAAGTTGTACAAAAGATTTTGGGAGATTTCACAATGAGGACATCTAAATTTTGTGTGAATTGTAGAGTTGTACTTCCAAATTCATTAAATCATGGAATGAAACATAATACATCTCAGAAGAAGGGCAAAGGAAGAATAACTAGGAAAGATTTGCGCTTGCATAAGCTAGTCTTTGAGAAAGATGGATTGCCAGATGGAACTACAGTAGGATATTATATCCATGGAAAGAACTTATTAGCCGGTTACAAGAAGGGATTTGGAATTGTTTGTAGTTGTTGCAATAATAAGGTCAGTCCTTCTCAATTTGAAGCACATGCTGGTTGGGCATCACGACGAAAGCCCTATGTGAACATATTTACATGTAATGGACTATCACTCCATGATTTGTCTATCTCCCTATCACAAGGTCGCAAATTTTCTACCAATGATAATGACGACCTATGCAGTATATGTAGAGATGGAGGAAATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTACCTCTCCCATATGTTCCAAGTGGTACTTGGTATTGTAGGTATTGTCAGAATTTGTTTCAAAAGAGCAAATGTATCAAGTTTAATGAAAATGACAAGGCAGCAAAACAAGTTGAGGACATTGATCCCTTAGAGCAGATAAACCAAAGATGCATTCGTATTGTCAAAGAGTTTGAACTTGGTGGATGTGGATTGTGTAGAGACCAAGATTTCAGTACAAGCTTTGGACCTCGAACAGTAATTATTTGTGATCAGTGTGGAAAAGAGTATCATATTGGGTGTTTGAAGGATCATAATATGCAGAACATAGAGGAATTACCTGAAGGGGATTGGTTTTGCTGTTCAGATTGTGAGCATATTAAAACTACCTTGGTGAATTTGGTGGCTAGTGGAGAAGAGAATCTTCCAATTCCCCTCTTGAGTTTGATTAAAAAGAAATACAATGACAAAGGTTTAGAATTTGGGCTTGGTATTGATATAAAATGGAGGCTTCTGAACTGGAAAGTGGGTAAATCTGAGGAGACTAGACAATTGCTTTCAAAAGTTGTTGCTATTTTTCATGAGCGATTTAGTCCAATAGTTCATACTACAACTGGCACGGATTACATTCCAACAATGCTTTTTGGAAGGAACATTCAAGGTGAAGACTTCAGTGGGATGTACTGTATGTTACTCACTGTCAATGAAGTGGTTGTATCTGCTGGAGTATTTCGTGTGTTTGGAACAGAACTGGCAGAACTTCCCTTGGTGGCAACTGTTACTGATTTTCAGGGACAGGGTTACTTCCAATCCCTGTTCTCTTGTATTGAGGGTTTGCTTGGATCATTAAAAGTGAAAAGGTTTGTTCTACCTTCTGCTGCTGAAGCTGAATCAATATGGACTGGTAAATTTGGGTTTACAAAACTGGAACAAGAAGAGATCAACAACTACTGGAAATATTATCACATGATGATCTTTCAAGGGACTTCCTTATTGCAGAAGCAAATTCCTCAACTTTGA 2340 0.3744 MANDTNSENFVESYGVRIGLKREFNFAMKSQSQICDSLGRTRSKKAQNLVQVSTNSSHRQYKNGVALNEKEVKSDLVDAKKLSQVCDETTMFVVSEKEHKSDGTKSQVQNECEKEHKNDELKTGVMQMQPVSDKVKEEGDNNVIVPILACQLETPIKAVQSTLKNLEKGDSNVKSNGVDKERNNGSIITISIPRTSSKGFMEKKFPSKLKDLLSSGILEGLLVKYVRSIKVVSPTIFELHAGSTNKRPPEYIFLENGSSLRDVMNTFLNIPLDTLEEVVQKILGDFTMRTSKFCVNCRVVLPNSLNHGMKHNTSQKKGKGRITRKDLRLHKLVFEKDGLPDGTTVGYYIHGKNLLAGYKKGFGIVCSCCNNKVSPSQFEAHAGWASRRKPYVNIFTCNGLSLHDLSISLSQGRKFSTNDNDDLCSICRDGGNLLCCDGCPRAFHIDCVPLPYVPSGTWYCRYCQNLFQKSKCIKFNENDKAAKQVEDIDPLEQINQRCIRIVKEFELGGCGLCRDQDFSTSFGPRTVIICDQCGKEYHIGCLKDHNMQNIEELPEGDWFCCSDCEHIKTTLVNLVASGEENLPIPLLSLIKKKYNDKGLEFGLGIDIKWRLLNWKVGKSEETRQLLSKVVAIFHERFSPIVHTTTGTDYIPTMLFGRNIQGEDFSGMYCMLLTVNEVVVSAGVFRVFGTELAELPLVATVTDFQGQGYFQSLFSCIEGLLGSLKVKRFVLPSAAEAESIWTGKFGFTKLEQEEINNYWKYYHMMIFQGTSLLQKQIPQL* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0894 779 PANTHER AUTOIMMUNE REGULATOR 1 775 - -
Pvu11g0894 779 Pfam Tify domain binding domain 357 405 IPR032308 -
Pvu11g0894 779 Pfam Tify domain binding domain 230 265 IPR032308 -
Pvu11g0894 779 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 649 761 IPR016181 -
Pvu11g0894 779 PANTHER AUTOIMMUNE REGULATOR 1 775 - -
Pvu11g0894 779 SUPERFAMILY FYVE/PHD zinc finger 414 466 IPR011011 -
Pvu11g0894 779 CDD PHD1_AIRE 423 463 - -
Pvu11g0894 779 Pfam PHD-finger 424 465 IPR019787 -
Pvu11g0894 779 SMART PHD_3 423 464 IPR001965 -
Pvu11g0894 779 SMART PHD_3 509 565 IPR001965 -
Pvu11g0894 779 ProSitePatterns Zinc finger PHD-type signature. 424 463 IPR019786 -
Pvu11g0894 779 Gene3D - 606 776 - -
Pvu11g0894 779 SUPERFAMILY FYVE/PHD zinc finger 509 566 IPR011011 -
Pvu11g0894 779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 487 IPR013083 -
Pvu11g0894 779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 568 IPR013083 -
Pvu11g0894 779 ProSiteProfiles Zinc finger PHD-type profile. 421 466 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0894 Pvu-Chr11 8415538 8421404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0894 321 776 PHD Transcription Factor Family AT2G36720 54.130 8.30e-175 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu11g0894 TDBD 4.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0894 - - pvu:PHAVU_011G087000g 1578.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1341 5 35509486 35517728 Pvu11g0894 11 8415538 8421404 PCT