Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0889 CTCTGCTATCTTTCTCTTCTGAAGGACAAGCTAGGTCAGCTGCAGAACCTGGTTGATGTTTTTGTGTCCCCTCAACATAACCTACCCGAGTCAACTCCCATGGCAATCTCCACCATGAACTCAACACTCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGTCAGCAAATGACTCTCGGTTCCTCTTCAGGTACTAGTAATATTGCTGATGAATTGCACCGAAACCAGAATCAGCAACAACTTGATCATGATAGATTGTTATCATTATCACCTCATCATCCATCAAACTTTGGAAACAACAATAGGGGTATGGTTAGTATGAGTAGCATTAGCATGAGCTCAGATATGATTAAAGGGCAAAGTGATTTCTTGTCAAGTATTGAAGGAGGGGCACTGGATTGGTTTGCTGAAAGCTATAACAATAACAATAGTGGAGATTGTAACATTAAGGATGAAGAAGCCGACATCAACGTGATGGTGGAGAGTGATATAATCGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCGTACTTTTGCCAAGTGTGTGGGAAAGGATTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAACTGCAGCCTTGAGCAACCCAATGAAAAGCAGGGATAGTTTATTGGGTGAGGGAAGTTCCACCAAGAAATTTTCGTGCCCTCAAGAAGGGTGCAGGTGGAACCAAAAACATGCCAAGTTCCAGCCCTTGAAGTCAATGATTTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCATAAACAGTTTTCGGTTCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCGTGTGGCACAACGTTTTCTAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGTGGGGCACACCCCAGCTATTCATGGCTTTTCAAGATATGTTCGATGA 1008 0.4435 LCYLSLLKDKLGQLQNLVDVFVSPQHNLPESTPMAISTMNSTLQEIIVAATSMRFTCQQMTLGSSSGTSNIADELHRNQNQQQLDHDRLLSLSPHHPSNFGNNNRGMVSMSSISMSSDMIKGQSDFLSSIEGGALDWFAESYNNNNSGDCNIKDEEADINVMVESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTTAALSNPMKSRDSLLGEGSSTKKFSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNHKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPAIHGFSRYVR* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0889 335 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Pvu11g0889 335 SUPERFAMILY beta-beta-alpha zinc fingers 179 207 IPR036236 -
Pvu11g0889 335 Gene3D Classic Zinc Finger 269 319 - -
Pvu11g0889 335 PANTHER OS08G0562300 PROTEIN 1 328 - -
Pvu11g0889 335 SMART c2h2final6 271 293 IPR013087 -
Pvu11g0889 335 SMART c2h2final6 233 266 IPR013087 -
Pvu11g0889 335 SMART c2h2final6 181 203 IPR013087 -
Pvu11g0889 335 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 328 IPR044300 GO:0010044|GO:0010447
Pvu11g0889 335 Gene3D Classic Zinc Finger 177 205 - -
Pvu11g0889 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0889 Pvu-Chr11 8366284 8367709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0889 4 332 C2H2 Transcription Factor Family AT5G22890 49.118 4.68e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g0889 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0889 - - var:108339426 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1344 5 35532409 35533653 Pvu11g0889 11 8366284 8367709 PCT