Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0887 ATGGAGATGGAAGGGTTATATTCTAATTCTAATTCCAATTCCAATTCCAGTTCTACCCAGAGCAACATAGCCAAGGGCAAACGCACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGTCGTTGCTAGCACCGCCGCCACTGGAGTCACCGCCACTAGTTGCTCCAGTCCTAATTCCGGTGGCTCCTCCACCACCACTTACGAGAGCGAAGAGGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAGGGAGGGGAACCTCACCGTCATCAACCTCGCCATCACAAGCAACGAGTTGAAGATCATGGTCTTGGAGATTGTAACGGTGTCAAGACAGGAAAGGGTAACGGTAACACCACCAACACCGCCGCAACAACCGCGGTTAACACCAAAGTTGGGTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCTCTCGGTGGACACAGGGCGAGTCACAAAAAGCCGAAACTCGTGGGTGAAGAGAAAAAAACACCACCCTCTCAATTGCAGCACATGTTTGTTACCAAGTATGATCGGTTCGAAGAGGATAACGTTAAAAGTGGTCCTCCAATTTCCCTTCAATTGGGTCATGGCAACAACAGCAAGGGTAAGATTCATGAATGTTCCATTTGTGGTTCTGAATTCTCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCGACAAACACCAGCACTGTTGACACAAGTTCTAACACCGTCACCACCGCTGTCGCCGCCACTGTTTCGCCGCCGCGTAACATCTTGCAATTGGATCTTAACCTCCCGGCGCCGGAGGATGATATTCGGGAGGCCAAGTTTCAATTTCCCGTAACAACTCAGATGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG 918 0.4913 MEMEGLYSNSNSNSNSSSTQSNIAKGKRTKRMRLLSPSGVVVASTAATGVTATSCSSPNSGGSSTTTYESEEEDMANCLILLAQGGEPHRHQPRHHKQRVEDHGLGDCNGVKTGKGNGNTTNTAATTAVNTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLVGEEKKTPPSQLQHMFVTKYDRFEEDNVKSGPPISLQLGHGNNSKGKIHECSICGSEFSSGQALGGHMRRHRASTNTSTVDTSSNTVTTAVAATVSPPRNILQLDLNLPAPEDDIREAKFQFPVTTQMLVGTPALVDCLY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0887 305 Gene3D Classic Zinc Finger 135 236 - -
Pvu11g0887 305 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Pvu11g0887 305 MobiDBLite consensus disorder prediction 1 30 - -
Pvu11g0887 305 MobiDBLite consensus disorder prediction 1 25 - -
Pvu11g0887 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Pvu11g0887 305 SMART c2h2final6 138 160 IPR013087 -
Pvu11g0887 305 SMART c2h2final6 214 236 IPR013087 -
Pvu11g0887 305 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 305 - -
Pvu11g0887 305 Pfam C2H2-type zinc finger 138 163 - -
Pvu11g0887 305 Pfam C2H2-type zinc finger 214 238 - -
Pvu11g0887 305 MobiDBLite consensus disorder prediction 51 70 - -
Pvu11g0887 305 PANTHER ZINC FINGER PROTEIN ZAT5 1 305 - -
Pvu11g0887 305 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Pvu11g0887 305 SUPERFAMILY beta-beta-alpha zinc fingers 138 236 IPR036236 -
Pvu11g0887 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0887 Pvu-Chr11 8345523 8347015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0887 18 305 C2H2 Transcription Factor Family AT2G28200 41.158 1.12e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g0887 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0887 - - vra:106755606 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1877 1 44582723 44583794 Pvu11g0887 11 8345523 8347015 ECH
Pvu7g1560 7 37352490 37353705 Pvu11g0887 11 8345523 8347015 ECH
Pvu5g1346 5 35542895 35543785 Pvu11g0887 11 8345523 8347015 ECH
Pvu11g0887 11 8345523 8347015 Pvu11g0887 11 8345523 8347015 ECH
Pvu5g1346 5 35542895 35543785 Pvu11g0887 11 8345523 8347015 PCT