Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0885 ATGGACACAATCCATCTTCATGAAGAGACTCTACTGCACATTGATGACTTTGAGCTACACGACTTTGTTGAAGATCCCAACTTAGATCAGTTGATCGATTTGATTCGTTCGGAGAAGAAACATGCCATTTGTGACTTCAATTCTGAGCTTATGAATGAAGCATTCATTGATAACTCTTTCTTGGCACCCCCTGCAATCCCATCTGATCACTGCAATAGTAATGCTGTCAATGTCTATGATTCAAACTCCACACCTAACTCCTTCGCTTATTTTGATGGGAAAGCCAAAGGAGGAGGGGGAGGAGAAGAGGAAGATGACATGGAGCACTCCTCTGCAACAACACATAGTAAGAGTCTTGTTCCTAAGTCAAAACCAAAAACTGACAGGTCCAAAACTTTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTCATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCTGTGTCATATATGCATGAGCTTCAAGCACAAGCCAATATGCTTAAAGATGAGGTTGAAGGACTTGAAACATCCTTACTGGTGTCTAAAAGTTATGAAGGATCAAATGAAAATCTCAAGAATGTTGAGTTTAACAGCCTTTCAATATGCAAGAAGATAATCCAGATGTACATGTTTCAAGTAGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGAGTGGCTGCCTCATTGTACAAATCTATAGAGTCTCTGAGAGGCTTCCATGTTCAGAATTCAAACTTATCCACAGTTGGTAACACTTTTCAACTTACATTTTCATTGAATGTGAAAAGCTCTGAGCCAGAAATGAACCTGCACAACTTGAAAATTTGGGTGTCTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCTACCATTTTTAA 939 0.3908 MDTIHLHEETLLHIDDFELHDFVEDPNLDQLIDLIRSEKKHAICDFNSELMNEAFIDNSFLAPPAIPSDHCNSNAVNVYDSNSTPNSFAYFDGKAKGGGGGEEEDDMEHSSATTHSKSLVPKSKPKTDRSKTLISERRRRDRMKEKLHALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKDEVEGLETSLLVSKSYEGSNENLKNVEFNSLSICKKIIQMYMFQVDAKGFYVKIVCNKGEGVAASLYKSIESLRGFHVQNSNLSTVGNTFQLTFSLNVKSSEPEMNLHNLKIWVSEAFVKQGFEFYHF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0885 312 MobiDBLite consensus disorder prediction 121 141 - -
Pvu11g0885 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Pvu11g0885 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 195 IPR036638 GO:0046983
Pvu11g0885 312 MobiDBLite consensus disorder prediction 90 141 - -
Pvu11g0885 312 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 310 - -
Pvu11g0885 312 Gene3D - 119 193 IPR036638 GO:0046983
Pvu11g0885 312 SMART finulus 133 182 IPR011598 GO:0046983
Pvu11g0885 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 310 - -
Pvu11g0885 312 MobiDBLite consensus disorder prediction 97 112 - -
Pvu11g0885 312 Coils Coil 173 193 - -
Pvu11g0885 312 Pfam Helix-loop-helix DNA-binding domain 134 177 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0885 Pvu-Chr11 8314224 8315692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0885 11 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.032 5.51e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g0885 HLH 9.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0885 - - var:108339427 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1348 5 35566395 35569369 Pvu11g0885 11 8314224 8315692 PCT