Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0883 ATGGAAACCACCCGAGAGGTTGTTTCATCTAATTGTCTTCTTGTATCAGAGTACTCTGAATCTAATCCCACACAACTTTCTGCTATGGAACGTGGGATTCAGAATTTTGGGTGCACGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGTTGTGATGAGGTTTTTTACTGTAGGCATTGCCATAACGAAGCTAAGAACTCTGAGGAGGTTGATGTTGTGGATCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTCAACAGTACTGCATAAACTGTGGAGTATGCATGGGCAAGTATTTTTGTTATATATGCAAATTCTTTGATGATGATACTTCAAAGAACCAACACCACTGTGATGAATGTGGCATTTGCAGAACTGGGGGCAAGGGTAACTTTTTCCACTGCAAGAGATGTGGATGTTGCTACTCCAAGGTAATGGAAAAGGGGCATCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCTTGTCTGCTTTGAGTATCTATTTGATACAGTAAGAGAAATCAGTGTCTTGCCTTGCGCGCATACTATACATTTAGACTGTGTCAAAGAGATGGAAAACATCATAGGTAAGGCATTTACATCTATCTACATGTACTCATGTCCTGTGTGCTCAAAATCCATATGTGACATGTCAAGTTTGTGGAAGAAGCTTGACAAAGTGATTGCCTTAACTCCAATGCCTGAAACCTTCAAAAACAAGATGGTGTGGATTCTTTGCAATGATTGTGGAGTGAAATCTCATGTACAATTCCATATTGTGGCCCATAAGTGCTTAAGTTGCAATTCATACAACACAAGACAGATACAGGGAGCATCTGCTACAACAAGCTCGTCTAGAGTGACCGAAATGGTGATATGA 888 0.411 METTREVVSSNCLLVSEYSESNPTQLSAMERGIQNFGCTHYRRRCKIRAPCCDEVFYCRHCHNEAKNSEEVDVVDRHDVPRHEIKKVQQYCINCGVCMGKYFCYICKFFDDDTSKNQHHCDECGICRTGGKGNFFHCKRCGCCYSKVMEKGHRCVEGAMHHNCLVCFEYLFDTVREISVLPCAHTIHLDCVKEMENIIGKAFTSIYMYSCPVCSKSICDMSSLWKKLDKVIALTPMPETFKNKMVWILCNDCGVKSHVQFHIVAHKCLSCNSYNTRQIQGASATTSSSRVTEMVI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0883 295 ProSiteProfiles Zinc finger RING-type profile. 163 214 IPR001841 -
Pvu11g0883 295 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 22 293 - -
Pvu11g0883 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 234 IPR013083 -
Pvu11g0883 295 ProSiteProfiles Zinc finger CTCHY-type profile. 98 162 IPR017921 -
Pvu11g0883 295 SMART ring_2 163 213 IPR001841 -
Pvu11g0883 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 22 293 - -
Pvu11g0883 295 Pfam CHY zinc finger 38 108 IPR008913 GO:0008270
Pvu11g0883 295 Pfam Zinc-ribbon 218 276 IPR039512 -
Pvu11g0883 295 Gene3D - 242 286 - -
Pvu11g0883 295 SUPERFAMILY Zinc hairpin stack 99 156 IPR037275 -
Pvu11g0883 295 SUPERFAMILY RING/U-box 162 219 - -
Pvu11g0883 295 ProSiteProfiles Zinc finger CHY-type profile. 31 125 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0883 Pvu-Chr11 8292245 8299636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0883 34 282 C2H2 Transcription Factor Family AT3G18290 38.462 5.45e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0883 K10144 - gmx:100812709 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0883 11 8292245 8299636 Pvu11g0883 11 8292245 8299636 ECH