Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0882 ATGGTTCATTCATTCAAGTTCGCATTGTGTTTTCGATCCTCTTTTCCCTTTTCCTTCTATTCCTCCCAAACTGTTAGGGTTTCCTCTCTCTTCTCTTTCCCTCTCTCTCTCCCCTCCGTTTCTCTCCGCGCCATGTCCAAGCCACCCTCCGCCTTCGACGCTCTCATGTCCGGCGCCCGCGCCGCCGCCAAGAAGAGTTCCCAGTCCAAACCCCAAACACCCAATCTTTCATCATCCCCCAAGAAAAGAAAATCCCCACACTCCGCTTCCTCACAAAACCCTAGCAACAGCAAATCCCCCAAACTGCCTTCTCCGCCCGTAACCGTTGAACCGGAGCAAGCTGCTGTTAAACCGGAGCAAGCTGTTAAACCGGAAGAAGCTGTTAAACCGGAAGAAGCTGTTAAACCGGAAGAAGCTATTAAACCGGAACAACGGAAGGTCCGCCACCTGTCGTCGTCTAATTCTTCGAACGGGAAGACCGTGGAGCTGATTAAGCAAGTTCCGCAGCTGAAGCAGAAACCATCGAGTTTCGACCCCGCTTCGGTGACTGCATGGGAGAAGGGACAGCCAGTGCCGTTTCTCTTTCTCGCTTTGGCATTTGATATGATTTCTCAGGAAAGTGGAAGAATTGTTATCACTGACATTGTTTGCAATATGCTGCGGACTGTGATGCTCGTCACGCCGGAGGATCTTGTTCCCATCGTTTACCTCTCCGCGAACCGGATTGCGCCTGCTCATGAAGGGTTGGAGTTGGGAATCGGCGAGTCGATCATTTCCAAGGCGCTCGCGGAGGCCTATGGAAGGAACGAGTCGTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAAGAGAGCCGTTCGTCTCAACCTATGATGTGGAAGCCTGAAGCATTGACCATTAGGAAGGTTTTCAACACTTTTCACCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAACCATATCAAGGCACTTCTTGTTGCTGCAACTGAGTGTGAACCTCAATATCTAATTCGTTTGCTTCAGGCGAAGTTGCGAATTGGTTATGCAGAACAAACTCTTTTGGCTGCATTAGGCCAAGCTGCAGCGTACACTGAAGAACACTCTAAACCACCTCCTGAAATTCAGTCTCCTTTAGACAAGGCTTCGGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTATGGATGCTTCCAAAGAATTGCAAATTTACTCCTGGTGTTCCAATTAGACCTATGCTGTCAAAGGCAGCAAAAGGTGTGACTGAAATTCTAAACAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTATCTGGAGAATGGTTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACTGAGAAGTTTCCTGATGTTGCTGCCGCAGTTTCAAGGTTAAAGAAACCGGGTGTATCTTCATTTATTCTTGATTGTGAAATTGTTGCATATGACCGCGCAACACAGAAGCTTCTTTCTTTCCAGACTCTTACTACTCGAGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTTTGCGTATTTGCTTTTGATTTGTTGTATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTCAGAGTCCGTAGAGAGCATCTTTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAGCATTAACTTCAAATGATGTTGAGGAGATACAAAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTAATCATTAAAACATTAAATGAGGATGCTACATATGAACCAGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGAGAATTTAGGGGACTCTGTAGATTTGGTACCTATTGCTGCTTTCCACGGACGTGGAAAACGTACAGGAGTTTATGGTTCCTTCCTCCTGGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATTGGAACGGGATTCGCAGAATCTGATCTTGTAGAACGTTCTTCCAGTCTTCGTTCTAATGTGATTTCCAAGCCAAAGTCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAAGTGAGAGCGGCAGACCTGACCATTAGCCCTGTCCACCGTGCTGCAGCGGGCATAGTTGATCCGAAAAAGGGCATATCTCTTCGATTTCCACGACTAGTTCGACTCCGGCATGACAAAACTCCTGAACAGGCCACGTCAGCCGAGCAGGTTGCTGAGTTGTATAAAGCTCAAAAACACAATCAAGCGAACAAACAAGATGACGAAGATGAAGAAGATTATTGA 2427 0.4491 MVHSFKFALCFRSSFPFSFYSSQTVRVSSLFSFPLSLPSVSLRAMSKPPSAFDALMSGARAAAKKSSQSKPQTPNLSSSPKKRKSPHSASSQNPSNSKSPKLPSPPVTVEPEQAAVKPEQAVKPEEAVKPEEAVKPEEAIKPEQRKVRHLSSSNSSNGKTVELIKQVPQLKQKPSSFDPASVTAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNMLRTVMLVTPEDLVPIVYLSANRIAPAHEGLELGIGESIISKALAEAYGRNESWIKTQYQKKGDLGLVAKESRSSQPMMWKPEALTIRKVFNTFHLIAKESGKDSQEKKKNHIKALLVAATECEPQYLIRLLQAKLRIGYAEQTLLAALGQAAAYTEEHSKPPPEIQSPLDKASDIVKQVYSVLPDYDKIISALLTEGLWMLPKNCKFTPGVPIRPMLSKAAKGVTEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKKPGVSSFILDCEIVAYDRATQKLLSFQTLTTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMENLGDSVDLVPIAAFHGRGKRTGVYGSFLLACYDNNNEEFQSICKIGTGFAESDLVERSSSLRSNVISKPKSYYRFGETINPDVWFEASEVWEVRAADLTISPVHRAAAGIVDPKKGISLRFPRLVRLRHDKTPEQATSAEQVAELYKAQKHNQANKQDDEDEEDY* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0882 808 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 174 425 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu11g0882 808 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 250 790 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pvu11g0882 808 ProSitePatterns ATP-dependent DNA ligase signature 2. 612 638 IPR016059 GO:0003909
Pvu11g0882 808 Gene3D - 444 642 - -
Pvu11g0882 808 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 426 644 - -
Pvu11g0882 808 Pfam ATP dependent DNA ligase C terminal region 663 774 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pvu11g0882 808 ProSiteProfiles ATP-dependent DNA ligase family profile. 540 676 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pvu11g0882 808 Gene3D DNA ligase/mRNA capping enzyme 463 588 - -
Pvu11g0882 808 Gene3D - 643 806 IPR012340 -
Pvu11g0882 808 MobiDBLite consensus disorder prediction 122 148 - -
Pvu11g0882 808 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 458 466 IPR016059 GO:0003909
Pvu11g0882 808 PANTHER DNA LIGASE 1 47 807 - -
Pvu11g0882 808 SUPERFAMILY Nucleic acid-binding proteins 646 792 IPR012340 -
Pvu11g0882 808 CDD OBF_DNA_ligase_I 646 791 - -
Pvu11g0882 808 Pfam DNA ligase N terminus 192 367 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu11g0882 808 Pfam ATP dependent DNA ligase domain 434 638 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pvu11g0882 808 Gene3D - 168 436 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu11g0882 808 MobiDBLite consensus disorder prediction 58 158 - -
Pvu11g0882 808 MobiDBLite consensus disorder prediction 62 98 - -
Pvu11g0882 808 CDD Adenylation_DNA_ligase_I_Euk 423 641 - -
Pvu11g0882 808 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 47 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0882 Pvu-Chr11 8279669 8289168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0882 28 806 Core DNA Replication Machinery Family AT1G08130 64.758 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0882 K10747 - gmx:100783155 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0882 11 8279669 8289168 Pvu11g0882 11 8279669 8289168 ECH