Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0868 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAGTGTTAAGAAAGGGCCATGGTCACCAGAAGAAGACACAAAACTGAAGGAGTACATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTTAGAAGATGTGGGAAGAGTTGCAGATTGAGATGGCTCAACTATCTCAGGCCCAACATTAAGCATGGAGATTTCTCAGACGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGGACCGACAATGATATCAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATGGGGTTGCTTCCTCTTTCCCATCACAGAAAACAACTTTCATTTCCATCCTCTACCCTTCAAAACCCTCCACCCTCTCCTTCGTCCCACCAACTGTACGGAGAGTACGGCACCTACATCCCAGTAACAACATCTTTCACAGGCATGGAACATCTTTCCCTTCCTTCAGCTAACTATGAAAGCACAACAACCTCGGTTTCTCAAACCTTTTACCAAAGCCAAGACTCCATGGCTAGCGTCAGTCCCATGCAATGCTATTACCCTATGAGTGACAGCATGCTCATGTTTGGAAGCGAAGGAAGTTGCAGTTCCTCCGATGGAAGCTGCACTCAGGGAAGAGAAATCAAGCTAGAAGAAATCGGGTACCACAGCTACAACCATAACTTGATGCTTAGTTACAACAATAACAACACTAACGATGGAGACAAGTCATGTGTCGGAGGGTGCTTCAGCCAAACGCAAACAGCGTTGGATTACGATCTTGAGGATATTAAGCAATTGATTAGTAGCAGCAGCAGCAGCTTCAATAATAATGTTGATGAAAACAAGACAGAAGAGAAGGCGATGTACTGCTGCTACTACTAG 936 0.4476 MGRAPCCDKASVKKGPWSPEEDTKLKEYIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLSHHRKQLSFPSSTLQNPPPSPSSHQLYGEYGTYIPVTTSFTGMEHLSLPSANYESTTTSVSQTFYQSQDSMASVSPMQCYYPMSDSMLMFGSEGSCSSSDGSCTQGREIKLEEIGYHSYNHNLMLSYNNNNTNDGDKSCVGGCFSQTQTALDYDLEDIKQLISSSSSSFNNNVDENKTEEKAMYCCYY* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0868 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pvu11g0868 311 PANTHER OS09G0431300 PROTEIN 1 294 - -
Pvu11g0868 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pvu11g0868 311 PANTHER TRANSCRIPTION FACTOR RAX3 1 294 - -
Pvu11g0868 311 CDD SANT 16 62 IPR001005 -
Pvu11g0868 311 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pvu11g0868 311 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pvu11g0868 311 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pvu11g0868 311 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pvu11g0868 311 Gene3D - 70 136 - -
Pvu11g0868 311 Gene3D - 7 68 - -
Pvu11g0868 311 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pvu11g0868 311 SMART sant 13 64 IPR001005 -
Pvu11g0868 311 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0868 Pvu-Chr11 8102912 8105001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0868 1 119 MYB Transcription Factor Family AT5G57620 89.076 7.21e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g0868 Myb_DNA-binding 6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0868 K09422 - gmx:100779919 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1356 5 35675420 35677354 Pvu11g0868 11 8102912 8105001 PCT