Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0845 ATGAGCAGCTTAAGGCCTGAATTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATCCAAAACAGTTCCCAACATTTGCAGGAGTTCCCTAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATATTCTTCAAGTGAGAAATGTTCGAAACGGAAACATGCTCGACGAGGCCCTTTATTCATCGGATATGATAACTTTTTCCACTGCTTCGAATCCTTTATCTAATCCCAGAAACCCGTTGGAGTGTCAAGAGTTGATGATGGCTCAGTATGGTTCCACGTCCTTTCCTCATTCATCATCCCCTAAGGACCAACAATGTGGACCACGCCACTTGGGTTCTAATTGGATGGTGAATTATAACGAAAGCAATACCAACACCAACAACACCTTCTTCTCTTCTGACCTTAATAACAATGCTTCTGGTGAAATGGCCAATAGAGAAATTCAGAAGCAGTTAGGTGAAATGCATTACCCCCCTTCGTCTTCTTCACCTCCTCTTTACCATAATGCTTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAACCATGCTGAGCCTGTGCTTCATTATCAAGCAAACAGCGAGTTACGTTTTGGGGGGGCTAATTTATGGGCGAATAGTAGCGGAATGGGTTTCAAAAAGAATAATGAACAAGACATAAATCCTCATCAGGGTTTGTCACTGTCACTTTCATCAAACTCACAATCCAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGATGACCCTACACAATATTCAAAGTCAGTGAAGTGCTCCATGAAGCTGAACGTGCTTTCAAACAACACTGTTTATCGAAATGTTGGCCCCCTCGGTCCTTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGATTCTTGAAGCCGTGTCAACAGCTGTTAGATGAGTGGTGCTGTCAATATGGTTCAAAGTCTGCGAGAGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCTTCTATTTCAGCAGCTGCAGCTGCTGGTGATGCTCTTAATGTTGATGAAAGTGAAGGTGCTGCAAAAGGTGGTGGCAATTTGGGTGTTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGATAATACAAATAGCGCTGATGGCGGAGCCACGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGATGAGGTTACTAGGAGATTCAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCATTCGAGACAGTAGCGGGTCTTAGTTCGGCTACTCCGTATGTCTCCTTGGCTCTTAAGTCAGTATCCAAACACTTCAGATGTTTAAAAAATGCTATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTTTTCATTGCCAACCACAAGTAATGGTGGTAAATTTGACAATAATATGGCAAGGCTAAGGTGCATAGATCAAAGTTTTCAGAAACACAAATCTCTGGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGCTTACCAGAACGATCAGTGGCAATTCTTAAAGCTTGGCTATTTGAGCATTTTCTTCATCCGTACCCTACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCAAGAAACCAGGTGTCAAATTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAGCAGAACCCCGCCAAGCCTCTAATAAAAATGACCAGGTAGCTTCTGCATCTGAAGGTAGCAACCAGCCCAAATCAGATCACCAACCTGTGAGCAGGTTTGGCACGCAGGCATCATCACATGCAATCCATGACAATCAATTTCAGTGCTTGGAAATGGGGTCATCATCCTCAGCAGGAAACGAGGAACACATTGGAATGAATGAAGTCCAATGGAGTCAAGAGAAGAGGTCAAAACTGGAATGCCAGATTGCTACCACACCAAATATGGATGGGACAGTGATGGGGTTTATGCCGTACAGAAGAGGTGGACTTGAGGCTGGTGGTCTTGGATCTGTGTCACTCACTTTGGGTCTTAGGCATAGTGTTGAAGGTGTACAACAGCAACAACTGCAGCAAGAGGAGGATCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2235 0.4488 MSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDILQVRNVRNGNMLDEALYSSDMITFSTASNPLSNPRNPLECQELMMAQYGSTSFPHSSSPKDQQCGPRHLGSNWMVNYNESNTNTNNTFFSSDLNNNASGEMANREIQKQLGEMHYPPSSSSPPLYHNALQDMAYGVWGGNHAEPVLHYQANSELRFGGANLWANSSGMGFKKNNEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSVKCSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSARGGGCDVPEWVSRDVSAASISAAAAAGDALNVDESEGAAKGGGNLGVSSSVLYSSNENDNTNSADGGATSSFCLSSRPECQKNKAKLLYMQDEVTRRFKQYHQQMQMVVQSFETVAGLSSATPYVSLALKSVSKHFRCLKNAISDQLKLTCEVLGEDFSLPTTSNGGKFDNNMARLRCIDQSFQKHKSLGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGAAEPRQASNKNDQVASASEGSNQPKSDHQPVSRFGTQASSHAIHDNQFQCLEMGSSSSAGNEEHIGMNEVQWSQEKRSKLECQIATTPNMDGTVMGFMPYRRGGLEAGGLGSVSLTLGLRHSVEGVQQQQLQQEEDLRRQFGGHMIHDFVG* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0845 744 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 716 - -
Pvu11g0845 744 Gene3D - 524 586 - -
Pvu11g0845 744 MobiDBLite consensus disorder prediction 220 257 - -
Pvu11g0845 744 SUPERFAMILY Homeodomain-like 523 587 IPR009057 -
Pvu11g0845 744 CDD homeodomain 521 582 IPR001356 GO:0003677
Pvu11g0845 744 Pfam Homeobox KN domain 538 577 IPR008422 GO:0003677|GO:0006355
Pvu11g0845 744 Pfam Associated with HOX 292 462 IPR006563 -
Pvu11g0845 744 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 31 716 - -
Pvu11g0845 744 MobiDBLite consensus disorder prediction 597 630 - -
Pvu11g0845 744 MobiDBLite consensus disorder prediction 591 630 - -
Pvu11g0845 744 ProSiteProfiles 'Homeobox' domain profile. 518 581 IPR001356 GO:0003677
Pvu11g0845 744 SMART prehox3 287 463 IPR006563 -
Pvu11g0845 744 SMART HOX_1 521 585 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0845 Pvu-Chr11 7746056 7753053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0845 376 715 Homeobox Transcription Factor Family AT4G34610 41.813 2.22e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu11g0845 POX 1.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0845 - - gmx:100810379 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1371 5 35895802 35901373 Pvu11g0845 11 7746056 7753053 PCT