Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0825 ATGAAGGACTGGTTGTTTTTTGACAAGACTTTTAATGGTTTGTCGGACGATATTCTTGATGATGTCACGGACATGGAGCTTTTCGATTTGCCCCTTGAAGATGTGGAAACTGACGATGGTATGGAACAAGATTGGGATGCTCAGTTCAAATTCATTGAAGAGCCTTCACTGGGAATTTTTCCTGTACAATCGTCTCAGCTCTGTGCTCGTACTCAAAATGAGATTGTGAAAGTCGAAACGGGTTTCTCTGCTTCTCCAGCGAAGACGGCGGGACCGGGACCTACATATAGCAAAAATATTCCTATTCAAAAAGTGTCTTTCAAAGGAAAAGATTTGCACCAATTCCAAACAAACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGCAGTTCTCCCTCAGTTGAGAACTCTAACTTTGAGTTACCTGTTATCCCAACAAAGCGTCCCCGAAGCAAACGCAGGGCTCTCTCAAACATTACCCTGCTATACTCCATTCCTTTCATCTGCACTTCACCAGCTTTTCAAAAATTTCGAAGAACAGCTGTCTCAAAATCAGATTTAGAAACACAACCACTTGGGAAATTGTCGAGCATGGTAAAAAAGCAGAGGAAAAAGAATGTTCCTCTGCTAGCTAACAAAGAGATGAAGAGATCCTCATCAGAGGAATCAGTTGCAGTCAGAAAATGCTTGCATTGTGAGGTGACAAAGACACCACAATGGAGAGAGGGACCAATGGGTCCAAAGACCCTATGCAATGCTTGTGGAGTTCGGTACCGATCTGGTAGGCTCTTTGCTGAATACCGACCTGCAGCTAGCCCCACTTTTGTAGGATCATTGCACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCACCCAGGTGA 888 0.4347 MKDWLFFDKTFNGLSDDILDDVTDMELFDLPLEDVETDDGMEQDWDAQFKFIEEPSLGIFPVQSSQLCARTQNEIVKVETGFSASPAKTAGPGPTYSKNIPIQKVSFKGKDLHQFQTNSPVSVFESSSSSPSVENSNFELPVIPTKRPRSKRRALSNITLLYSIPFICTSPAFQKFRRTAVSKSDLETQPLGKLSSMVKKQRKKNVPLLANKEMKRSSSEESVAVRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVGSLHSNSHKKVLEIRNRAPR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0825 295 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Pvu11g0825 295 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Pvu11g0825 295 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 27 293 - -
Pvu11g0825 295 SMART GATA_3 222 272 IPR000679 GO:0006355|GO:0043565
Pvu11g0825 295 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Pvu11g0825 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 283 - -
Pvu11g0825 295 CDD ZnF_GATA 227 274 IPR000679 GO:0006355|GO:0043565
Pvu11g0825 295 Gene3D - 223 272 IPR013088 GO:0006355|GO:0008270
Pvu11g0825 295 PANTHER GATA TRANSCRIPTION FACTOR 27 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0825 Pvu-Chr11 7501302 7509032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0825 14 292 C2C2-Gata Transcription Factor Family AT1G08000 38.047 8.88e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu11g0825 GATA 5.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0825 - - vun:114168578 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1389 5 36151326 36155985 Pvu11g0825 11 7501302 7509032 PCT