Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0824 ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGCGCAGGTGGCATGGTTCAGATGCCCAAAGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCACGCTGAACATGCTCACACCAACATTGATCTCAGGGTTCCGCCACACATTCTCTGCAACGTCGAAGCCGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTCTTCGCCAAACTCAGTCTGGTTCCTCTCAGAAACTCGGAACTCGGTCCCGACTCGGAGGGGGGTGCTGACGCGGCGGAGGCTTCGGAGAAACCCGCGTCTTTCGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCACGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGGTGGCGAAGGACGTGCAGGGGGAGACTTGGAGGTTCCGGCACATATACCGAGGGACGCCACGTCGACACTTGCTGACGACAGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGGGAGTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATTGGGTGTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTGTAGGTGGAAGTGGGAATTGTGGGATTGGTCCTTATGGGCCTTTCTCTTTTTTCCTTAGAGAAGAGAGCAAGAGTTTAAGGAATGGTGGTGGTGGTGGTGGGAATTTGAGTGGAAGGGCCAAAGTGAGGCCTGAGGCTGTTGTTGAAGCTGTGACACTGGCTGCTGGTAATAAACCTTTTGAGATTGTTTATTATCCAAGAGCTAGTACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGATCCCATCCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTGCTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACTTACCGGTCATCAATTTCACACCTTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCAACGTTTTCAGGCAACCATCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCGGATAACCCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGATCATCACTATCAGATCTCCACCTTAACAAAAAACTGCAGTTGGGGTTGCTTCCATCTAATATCCACCAACTTGGAGTGTATAGTGGGATTTCAAATGGTAACACCACCACCAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGTCCATGGGGAAATCTAGCAATAGTTTGGAGAAACCTGATGATGTTAAGAAACATCAGTTTTTGCTCTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAGATGTGTTATCTCGTGGGAAAAAATCTCCAGATGATGTTAAGGACAAAGAGAAGTGCGTTTTGGGTGACTCCCAATCAGCACTCTCACGGCAGTTTTCATCAGGGAAAGCTTCTGCTGCTGAGTTATCTTGGCAACTTGGCTTGGATACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTAGACCTATCACGGCTTGGTTCTTATGAAGAACTGTATAGGAGACTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCTGAATTATGTATTCTACTATGATGCCAAAGGTGCTGTTAAGCAAACTGGTGATGAACCCTTCAGTGACTTCATGAAGACAGCGAAAAGATTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTAAAAGGGCCTTTATTACAGGAACTCGGAATGGTGAACATGGACTTGATGCATCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA 2091 0.4878 MKEGEKVLDPQLWHACAGGMVQMPKVNSKVFYFPQGHAEHAHTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLSLVPLRNSELGPDSEGGADAAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGCEVWNSASGSGSGSVGGSGNCGIGPYGPFSFFLREESKSLRNGGGGGGNLSGRAKVRPEAVVEAVTLAAGNKPFEIVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNHLGPNHPLCGFSDNPPAGIQGARHAQIGSSLSDLHLNKKLQLGLLPSNIHQLGVYSGISNGNTTTNHDKSKESLSHLLSMGKSSNSLEKPDDVKKHQFLLFGQPILTEQQISRDVLSRGKKSPDDVKDKEKCVLGDSQSALSRQFSSGKASAAELSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEILNYVFYYDAKGAVKQTGDEPFSDFMKTAKRLTILTDSGSKNVKRAFITGTRNGEHGLDASNKTGPLSIFA* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0824 696 ProSiteProfiles PB1 domain profile. 584 664 IPR000270 GO:0005515
Pvu11g0824 696 CDD B3_DNA 104 205 IPR003340 GO:0003677
Pvu11g0824 696 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu11g0824 696 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Pvu11g0824 696 Gene3D - 583 669 - -
Pvu11g0824 696 Gene3D - 313 385 - -
Pvu11g0824 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu11g0824 696 SMART B3_2 105 207 IPR003340 GO:0003677
Pvu11g0824 696 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Pvu11g0824 696 SUPERFAMILY DNA-binding pseudobarrel domain 100 206 IPR015300 -
Pvu11g0824 696 MobiDBLite consensus disorder prediction 484 510 - -
Pvu11g0824 696 Gene3D - 103 207 IPR015300 -
Pvu11g0824 696 PANTHER AUXIN RESPONSE FACTOR 2 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0824 Pvu-Chr11 7468846 7472509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0824 1 668 B3 DNA Binding Superfamily AT4G30080 57.267 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu11g0824 B3 1.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0824 - - gmx:100814686 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1390 5 36164182 36167531 Pvu11g0824 11 7468846 7472509 PCT