Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0810 ATGAGTGCAGAGGAAAAGCCTGTGAATGAGGAACATGATGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCTCACATGTTCCTCCTCGGAAGCGACAGAATCTTCTTCTGGAAATACCCTCACGAACAGAAGAGAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAATTCTAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACACATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAGCCATAAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGAACACCAGCAGCAGATGTTGAAAAGGCAAATACTGCAGCTCCAGAACTTTCCTCTTCAGGCATTGTAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTACCACTAGATGAAATTAGACAATCAAACAACGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGATAAAAGCTTAAGGAGGATGGATTCATTTTTTCGCATTGTTCCTTCTACTCCTCGAGTAAAGGAAATAGATGAATTGGTAGACACTTCAACAAATGATACTGAAAATCAAGATGCTAATGGTGAAGATATAGCCGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGTGCAAGTAGGTCTCAGCTGGAAGATGCCACCGGATACAGGGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTTGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGCACTGGTGCAATTGCCATATCACTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGTAAAAAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCGCATATTTTTTACTCCATGGTTCATGTGCAAGCCGTTTTGTCTATCCTTCTGGCTACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTATAGATGGAGAGGAAGATTGCAAGCTTTATCAGAGCAGCGACACGGCCCTCAATTGATCCCACAAACAGGACAAAATCCACGATCTTCAAACACTCCTCATTCAGATTCAGGTTCAGGTCCTCCAAACCACAGTCAAGCTGTGGTGCAAAATGAACAGAACTCAAATCAGAGTTGA 1551 0.4294 MSAEEKPVNEEHDAGSCRRTVSLPVQKVDDPMGITEETSHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPNSNPTPTPKRVNFLVSSRSVDPPTHNSPGPSTSRGKSAIRSLLPKLSFRYRTPAADVEKANTAAPELSSSGIVEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRVKEIDELVDTSTNDTENQDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGASRSQLEDATGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSMVHVQAVLSILLATFAGFGVVMSGSSILVEFYRWRGRLQALSEQRHGPQLIPQTGQNPRSSNTPHSDSGSGPPNHSQAVVQNEQNSNQS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0810 516 PANTHER OS02G0165000 PROTEIN 29 485 - -
Pvu11g0810 516 MobiDBLite consensus disorder prediction 172 188 - -
Pvu11g0810 516 MobiDBLite consensus disorder prediction 171 211 - -
Pvu11g0810 516 MobiDBLite consensus disorder prediction 473 516 - -
Pvu11g0810 516 SUPERFAMILY RING/U-box 260 315 - -
Pvu11g0810 516 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Pvu11g0810 516 MobiDBLite consensus disorder prediction 79 110 - -
Pvu11g0810 516 SMART ringv_2 263 312 IPR011016 GO:0008270
Pvu11g0810 516 MobiDBLite consensus disorder prediction 1 110 - -
Pvu11g0810 516 CDD RING_CH-C4HC3_MARCH 264 312 - -
Pvu11g0810 516 MobiDBLite consensus disorder prediction 53 71 - -
Pvu11g0810 516 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 29 485 - -
Pvu11g0810 516 MobiDBLite consensus disorder prediction 1 17 - -
Pvu11g0810 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 319 IPR013083 -
Pvu11g0810 516 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0810 Pvu-Chr11 7303167 7309351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0810 261 367 C3H Transcription Factor Family AT2G37950 35.965 3.84e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0810 - - gmx:100815566 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1404 5 36371524 36375893 Pvu11g0810 11 7303167 7309351 PCT