Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0809 ATGGCGGAACCTGTCACCAACATCCAACTCTCTCCCTCTAAAACCCTAGGTTCAATCAACGGTCATGATTCTATTGTTGAACCGAATCAAACGCTTTCACAAGATGCTCAACTCAATCAAGAAAACGACGTCGTCGTTCCGACCGGGAAACGGAATAGGGAAGACAACGACGGCGAGGAAAGTTCGCTTCATCCCATGTGGAAGACCAGCCTCTGCTCCTTCTACAGGAGCCACAACAACACATGCAACCACGGCGACACGTGCCGCTACGCGCATGGCGAGGAGGAACTCCGCCCTCGCCCCGATAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCATTGAAGACCGAGACGGGCGAAAAGTGCGCCGTATCGGAGGACGTGATGATGACGGAGGCTGTTGTCGACGATGACGATTACGGTTCCAATCACGCGCTTAGCAAATGCTTGGTGCATTTGCCGCGGAAGTGGAGTTCCGAGAATTTGAGGAATTTTCTCAACGAACAGGGTATAGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAATTGAAGAGTTCATCAAAGGATTTAGAGGGAAAAACAATTGGCAACAAAACGGTAAAGGTTGCTGATGTCATTCCTCGGTCATTTGAAAAGAAAAGTAACCCCAGTGTTGCTTCCCATCAAGAATTGGATGAGGGGGTTGATGTTCCTTCGAGTGGAGCTTTGGATGCTGAAAATAATGATAAGTTGGCTGTTGATGGTTCTGTGTCTAAGTCAAGAAGTTTGCGTGATACTAGAAATGCTCGCAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGACTGGATTCTCAAGTCCAGGGAAATAGGTGGTCTTCCGTGCAAATTAGAAGGTATTATTGCATCTCCTATTGTAAATGGATACCGTAACAAGTGCGAATTCTCTGTTGGATATTCTCTGGAAGGCAAAGTGACTGTAGGTTTCATGATGGGAAACTTCAGGGAAGGTGTAACAGCAGTTGGGGAACCAATCGAATGCCCAAATGTTTCAAATATTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGGACAGTGACTTACCAGTTTGGAACCGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGGAGAACAAGTGGGAATACTGATCCTGCTGTAACTTTTGGTGGCATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAACTTTGATGATGCATTAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTGCTGGTGGAGCTACTTCGCAGTGTCCAACATTACCCCTAACGGCTCTGATTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCCGCTGATGCACCACTGCATTTGCTTACACTTCCTAAAGCAGGTGGGGATCCTGAGATCGGTGAAAACAATAATGCCATGGATGTAAGAATCCATGATTATATCAACAATCTCCAGTTCTCTATATCTCCAACCGCATTTTTCCAGGTTAACACTCTTGCTGCTGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACACTACTTTTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCAGTATCTGATGCCCATAAGAATGCTGAGATTAATGGCATAAAAAACATTAGGTTTATATGTTCAAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTCAATATGACTAAGAAAGAAGATGATTCTAACACCCCTAAAAGTGGCAATGACATTCCTGAGGATAATGCCTGCCCAGAGGCTGAAAATGGTGAAATGGCATCTCATTGTCCAGAAAATAACAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGATAGCACTTCCGAACAAGTTGATGGGATATCTGAACAGGCAGAGAACGTGACAGGATCTCAGTTAAGGGATGATGTAAATGTGCCTAAGGAACAAAGTGATGATCCAAATGTCTGTGGAAGTGGCAATGACATTCCTGGGGATAGTACCTGCCCAGGGCCTGAAACCAGTGAAATGACATCTCGTTCAGAAAATAACAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGGTAATTCTTCTGAAAATGGGAACACATCCATGCAACAGTTCAAAAATATTGTTGCCATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAGGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTTTACATATCCTGCAATCCTGAAAGTCTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCTCCCCTAAAAATTGAGAAAGGCAATAAAGACAATAGAGGATGGAGAAACATGAGCAGTGCTGGCTTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2589 0.4484 MAEPVTNIQLSPSKTLGSINGHDSIVEPNQTLSQDAQLNQENDVVVPTGKRNREDNDGEESSLHPMWKTSLCSFYRSHNNTCNHGDTCRYAHGEEELRPRPDNTWDPTSERAKKALKTETGEKCAVSEDVMMTEAVVDDDDYGSNHALSKCLVHLPRKWSSENLRNFLNEQGIAFKHAKKKKGMMIGFVTFEDEEQLKSSSKDLEGKTIGNKTVKVADVIPRSFEKKSNPSVASHQELDEGVDVPSSGALDAENNDKLAVDGSVSKSRSLRDTRNARKACPNGVSLPDWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMMGNFREGVTAVGEPIECPNVSNIACKYATIFQEFLQDSDLPVWNRFKNTGFWRQLTVREGRTSGNTDPAVTFGGIAEVMLIVQVSTANFDDALVAAEFKRLAQAFVAGGATSQCPTLPLTALIVQDHQGISNVAPADAPLHLLTLPKAGGDPEIGENNNAMDVRIHDYINNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHKNAEINGIKNIRFICSKAEDVMGSLLREYLNMTKKEDDSNTPKSGNDIPEDNACPEAENGEMASHCPENNNAEVGSEVQKDSTSEQVDGISEQAENVTGSQLRDDVNVPKEQSDDPNVCGSGNDIPGDSTCPGPETSEMTSRSENNNAEVGSEVQKGNSSENGNTSMQQFKNIVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPLKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0809 862 Gene3D - 316 401 - -
Pvu11g0809 862 CDD RRM_SF 151 216 - -
Pvu11g0809 862 Gene3D - 58 100 - -
Pvu11g0809 862 CDD AdoMet_MTases 546 600 - -
Pvu11g0809 862 SUPERFAMILY RNA-binding domain, RBD 154 227 IPR035979 GO:0003676
Pvu11g0809 862 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 67 94 IPR000571 GO:0046872
Pvu11g0809 862 MobiDBLite consensus disorder prediction 1 46 - -
Pvu11g0809 862 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 82 862 - -
Pvu11g0809 862 Pfam Methyltransferase domain 544 602 IPR025714 -
Pvu11g0809 862 Gene3D Vaccinia Virus protein VP39 491 861 IPR029063 -
Pvu11g0809 862 MobiDBLite consensus disorder prediction 47 62 - -
Pvu11g0809 862 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 262 862 IPR010280 GO:0006396|GO:0008173
Pvu11g0809 862 ProSiteProfiles Zinc finger C3H1-type profile. 66 95 IPR000571 GO:0046872
Pvu11g0809 862 SUPERFAMILY CCCH zinc finger 64 99 IPR036855 GO:0046872
Pvu11g0809 862 ProSitePatterns RNA methyltransferase trmA family signature 1. 757 789 IPR030390 -
Pvu11g0809 862 MobiDBLite consensus disorder prediction 226 252 - -
Pvu11g0809 862 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 82 862 IPR045850 -
Pvu11g0809 862 MobiDBLite consensus disorder prediction 614 744 - -
Pvu11g0809 862 SMART c3hfinal6 66 94 IPR000571 GO:0046872
Pvu11g0809 862 Gene3D Vaccinia Virus protein VP39 295 315 IPR029063 -
Pvu11g0809 862 MobiDBLite consensus disorder prediction 1 63 - -
Pvu11g0809 862 MobiDBLite consensus disorder prediction 643 685 - -
Pvu11g0809 862 Gene3D - 151 220 IPR012677 -
Pvu11g0809 862 MobiDBLite consensus disorder prediction 712 744 - -
Pvu11g0809 862 Pfam tRNA (Uracil-5-)-methyltransferase 746 797 IPR010280 GO:0006396|GO:0008173
Pvu11g0809 862 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 302 862 IPR029063 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu11g0809 tRNA_U5-meth_tr 1.3e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0809 K15332 - gmx:100816103 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0809 11 7277076 7282579 Pvu11g0809 11 7277076 7282579 ECH