Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0761 ATGATGTCTGAAGAATCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCAAGCTCAAACCCTAATAATAATCCTAACCCTAGTTCAAATCCAGCAAAGAGAAGGAGAAGTCTCCCCGGAACACCAGATCCAGATGCAGAAGTGGTAGTTCTGTCACCAAAGTCCCTCATGGCCACCAACCGTTTCATATGTGAAATTTGCAAAAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGTGGGCACAACCTTCCTTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGACCCCTCTAGAGCCTTGGGAGATTTGACAGGCATAAAGAAGCACTATAGCCGAAAACATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACCCTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGTGACGCTTTGGCTGAAGAAAGTGTGAGGCTAACAACAGTTCCAGCAGCTTTAAGCAACTTGAGAAAAGATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCAGGATTTCACTCAGATCAATTAGGTGGTTCAGGAACATTAGAACCGTTGGTGAATTATGCTGACGCAGACCATCATCATCATAATCATAATCACCAACAACAACAGCAGCAAAAGCTAAGGCTACCACTCTGGCTAGACCACCAGGCCAATCCACAAGTATTTCACCACCCTCTTATTAACTTCCCAACCAAAACTAGTGCTTTCACTTCTTCGGGGCCAAACCCTGTGCTTGATGGGGTGCAAACGATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTGCCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCATAGCGCAGGCTCTAACTTGTACTTGAGTAGTAATCAGAACCCACCTCACTACATGTCAGCCACCACGCTGTGGCAGAAAACTGTTCAAATGGGATCTATGAGGGTGAATGACAACACGTTTCGCTCCATAGGCAGCAATAGAAACAGCAACCACAACAATGCTGTCAACAACGTTGTTGTTGAGGTTCAGAAGCTCGACGAGTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGGTATTTATTAAATGATGACTCAAACAACTCGTTTGTGGTTGTGAATGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACACCAGCATCAATTATGGGAAAGCAATTACACTCCATAAGCTCACACAACAAAAATCAACTTGGTTTAACCCGAGATTTTCTGGGTGTCGGAGATAATAACATTGAATCAATAAGGAGACCTTTTTTTCAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCATGAACCTGCAGAGCCAGTACGGTGGACACTATGTCTAG 1626 0.4582 MMSEESFSVPPNTVRDSLVHVQPPSSNPNNNPNPSSNPAKRRRSLPGTPDPDAEVVVLSPKSLMATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRLTTVPAALSNLRKDHHLTNAQASRIPQIFSGFHSDQLGGSGTLEPLVNYADADHHHHNHNHQQQQQQKLRLPLWLDHQANPQVFHHPLINFPTKTSAFTSSGPNPVLDGVQTMDMFGPQFVNYRCPEASFGGANLSVLPPHGLKQEQEENKGDLSHSAGSNLYLSSNQNPPHYMSATTLWQKTVQMGSMRVNDNTFRSIGSNRNSNHNNAVNNVVVEVQKLDELVSVEGCTNLGGGGGYLLNDDSNNSFVVVNGTKGLEHMVMPVDEETPASIMGKQLHSISSHNKNQLGLTRDFLGVGDNNIESIRRPFFQQDLVEFNAMGSASAMNLQSQYGGHYV* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0761 541 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Pvu11g0761 541 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 22 506 - -
Pvu11g0761 541 SMART c2h2final6 146 166 IPR013087 -
Pvu11g0761 541 SMART c2h2final6 111 141 IPR013087 -
Pvu11g0761 541 SMART c2h2final6 69 91 IPR013087 -
Pvu11g0761 541 Gene3D Classic Zinc Finger 123 202 - -
Pvu11g0761 541 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 506 - -
Pvu11g0761 541 MobiDBLite consensus disorder prediction 1 42 - -
Pvu11g0761 541 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
Pvu11g0761 541 Gene3D Classic Zinc Finger 47 122 - -
Pvu11g0761 541 MobiDBLite consensus disorder prediction 1 54 - -
Pvu11g0761 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0761 Pvu-Chr11 6750302 6753277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0761 39 214 IDZ Gene Family AT3G45260 84.659 2.01e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g0761 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0761 K25870 - gmx:100817691 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1408 5 36426999 36429796 Pvu11g0761 11 6750302 6753277 PCT