Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0751 ATGGATTTGGTTCCCAGCGTTAAGGAAAAATTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTGCACCTTTCAAAGCAGGGGAAGAAGCAGGATCTTGTTGATCGAATATTATCTGTTCTCTCAGATGAACAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAAGAACAGGTGGCAAAATTAGTTGATGATACATATAGGAAAATGAAGATATCTGGGGCCACTGATCTAGCATCTAAGGGTCAGGGAGCATCAGATAGCAGTAGTGTAAAGGTGAAAGGTGAAATTGATGATTCCTTCCAACCAGAAACAAAGATTCGCTGTTTATGTGGAAGTAGATTGGAAACAGGGGATTTGGTCAAGTGTGATGATCGAAGATGCCAGGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTGCAGAAGGCATCCCACCAGTTCCTGATAAGTTTTATTGTGAACTATGTCGGCTAAATCGTGCTGACCCATTTTGGGTTGCAGTGGCACACCCTTTGCTTCCCGTGAAGTTAACAACCACGAGCAATCCAACTGATGGAACCAACCCTGTGCAGAGTGTGGAAAGAACATTTCAACTTACTAGAGCAGACAAGGACTTGGTTTCCAAACCAGAAGTTGATGTTGAGGCTTGGTGTATGCTCCTAAACGACAAGGTCCCATTCAGGATGCAATGGCCACAATATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGAGCAACTAACAGACCTGGTTCCCAGTTGCTTGGAGCTAATGGGCGGGATGATGGTCCAATTATCACGCCATACACAAAAGACGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTCTAGGGGTTCGTATTGTTAGAAGGCGTAACATGCAGCAGATCCTAAACTTAATTCCAAAGGAGTCTGATGGTGAGAGATTTGAAGACGCTCTTGCACGTGTGTGTCGTTGTGTTGGGGGTGGAAACACAGATGGTGATGCTGATAGTGACAGTGATTTGGAAGTCGTTTCAGATACTTTCAGTGTCAACCTTCGCTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAACCCTTGTATTCACATGGGTTGCTTTGACCTTGAGGTTTTTGTGGAAATGAATCAACGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATTATCATTGATCCTTATTTCAATCGCATCACTTCTATGATGTTAAATTGTGGTGAAGAAATTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTGAAGACAAAGAGTGAAAGTGAACGCCAGGAATTAGGGAGTCTAGCACAGTGGCATCTTCCTGATGGATCTCCATGCGTTTCAGCTGATGGAGATTTCAAGAGAGTGGATACATTGAAGCAGGTCAAACAGGAAGGTGTTTCTGACAGTCCAACTGGTTTAAAACTTGGCATCAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAAATTGAAAGGGGTTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCTACTGGAAGTGGCCGAGATGGTGACGATCCTAGTGTAAATCAGGGTGGTGGTGGGAATATCGACTATTCTGCTGCAACTGGCATTGAAATAGATTCTCTGTGTCTCAATAATGTTGATTTAGCATATGAATATACTGCACATGACACTTCTGCTCAGGCGGGTGGTACAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAACGATCTTTTGGTATCGCCTCCGATTGCGTATAGGAACAACCAAAATGATGCTACAGATGGTTATTCTGTACAACCACCTGTAATAGTTGATTCATACACTGAAGATCATAATCTTGTTGGTGGAAATTCTTGCTTAGGACTCTTTCCCAATGATGATGATTTTGGGATGTCTTCCCTGTGGTCTATGCCTTCTGGAAGTCAGGCTGGTCCTGGATTCCAACTATTTGGTTCCGATGCAGATGTGTCAGATGCATTGGTCCATCTGCAACATGGTCCTGTGAATTGCTCTTCATCACTAAATGGTTATGCACTAGCTCCTGATACTGCTTTGGGATCTGGTAGTATCTTGCATGATTCCTCTGCTGGTCGGTTGGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTAGCATTTGGCGGTGATGATCCCTCACTTCAGATTTTTCTCCCCACTAGACCAGCGGACTCATCCATTCAGAATGAATTGAGAGATCAGGCAAATGTGGCTAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGTAGCAATGGTGATGCTTCTACTCAAAATGGATTGAATTCTAGACATCAAATCCCAACCAGAGATGTTGGCACAAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGAACTGACAGGCCAAGTAGGCAAAGGTCAGATAGTCCTTTCTCATTTCCTCGCCAAAGACGTTCTGTAAGACCCCGTTTGTACCTTTCTATTGATTCGGATTCAGAGTAA 2643 0.4325 MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAGGKEQVAKLVDDTYRKMKISGATDLASKGQGASDSSSVKVKGEIDDSFQPETKIRCLCGSRLETGDLVKCDDRRCQVWQHISCVIIPEKPAEGIPPVPDKFYCELCRLNRADPFWVAVAHPLLPVKLTTTSNPTDGTNPVQSVERTFQLTRADKDLVSKPEVDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVRRRNMQQILNLIPKESDGERFEDALARVCRCVGGGNTDGDADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFNPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMLNCGEEITEVEVKPDGSWRVKTKSESERQELGSLAQWHLPDGSPCVSADGDFKRVDTLKQVKQEGVSDSPTGLKLGIRKNRNGVWEVSKPEGTNTSSGNKLKGVFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGNIDYSAATGIEIDSLCLNNVDLAYEYTAHDTSAQAGGTEVIVLSDSEEDNDLLVSPPIAYRNNQNDATDGYSVQPPVIVDSYTEDHNLVGGNSCLGLFPNDDDFGMSSLWSMPSGSQAGPGFQLFGSDADVSDALVHLQHGPVNCSSSLNGYALAPDTALGSGSILHDSSAGRLDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSIQNELRDQANVANGVCTEEDWISLSLGGGAGGSNGDASTQNGLNSRHQIPTRDVGTNTLDDTASLLLGMNDVRTDRPSRQRSDSPFSFPRQRRSVRPRLYLSIDSDSE* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0751 880 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Pvu11g0751 880 Pfam PHD-finger 114 166 IPR019787 -
Pvu11g0751 880 Gene3D SAP domain 3 58 IPR036361 -
Pvu11g0751 880 MobiDBLite consensus disorder prediction 514 530 - -
Pvu11g0751 880 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Pvu11g0751 880 MobiDBLite consensus disorder prediction 541 564 - -
Pvu11g0751 880 SMART PHD_3 114 166 IPR001965 -
Pvu11g0751 880 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 815 - -
Pvu11g0751 880 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Pvu11g0751 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Pvu11g0751 880 MobiDBLite consensus disorder prediction 804 836 - -
Pvu11g0751 880 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Pvu11g0751 880 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 815 - -
Pvu11g0751 880 MobiDBLite consensus disorder prediction 513 532 - -
Pvu11g0751 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Pvu11g0751 880 SMART sap_9 11 45 IPR003034 -
Pvu11g0751 880 MobiDBLite consensus disorder prediction 799 880 - -
Pvu11g0751 880 Pfam SAP domain 12 42 IPR003034 -
Pvu11g0751 880 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Pvu11g0751 880 SUPERFAMILY SAP domain 1 59 IPR036361 -
Pvu11g0751 880 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0751 Pvu-Chr11 6607372 6618929 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu11g0751 PHD 2.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0751 - - gmx:100793735 1616.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1415 5 36497178 36512237 Pvu11g0751 11 6607372 6618929 PCT