Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0742 ATGCAGAAGATGAGGGAGGATGTCAGCCGAAGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCGACGATGTCTGAGACGGATTGGCAGCAGTGGGGCGATAACTTTGAGGAACCGTTCGACGAGGGTTCGTCCTCGTCGGGAAGGAGGGAGGAAGGCGTGGTTAGGGTTTACTTGAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGGAGAAGGTTGTGTTGTCTGGGTTAGGGGTTGCGATTTGTGACCTTAATGATAATTTGATATTCCAGGTTTCTAAGTCGGTGGTTGGGAATGGAACTAGCAAGGTCGTTGCGGAGCTTAAGGCGTTGATTGAAGCCTTCGATGTGGCTCTTTCTTTGGACTTGAAGCGCATCATTTACTATTCCGATTATCCTCCGCTTTTCCAATTTGTGAGACGAAAATGGTCTCCAAAACAGAAGAAGATCGCCATGTTGATTGATCGAGTTCTTCTGCTTCAAAGGAAGTTTACATACTGCGATTCAAGGCTATTGGCCAGACAGGATGTCAAGTTTGCATTTAAGCTTGCACGAGATGCGATTGTATCTCAGTCCACGAGACCCAGGGAACCTGGGAGTACGAAGAGTTTGAATGAAACTTGTGTTATATGTTTGGAGGATACTGATGTCAGTCAGATTTTTTCAGTTGATGAATGTCAACACCGCTATTGCTTTTCTTGCATGAAACAGCATGTGGAGGTGAAGTTGCTTCATGGAATTGTGCCTAAGTGCCCTCATGAGGGATGCAAGTATGAGCTTCTGGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGATACCATGCGGCAACGCAAATTGGAAGCTTCAATTCCTACTGCTGACAAAGTTTACTGCCCTTATCCAAGATGCTCTGCATTAATGACAAAAACTGAGGTCTTTGAGTACTCAAAAGATCTTATTGGAGAATCTCAACTGTCGGGACCCAAGAAATGCTTAAAATGCCATGGCCTTTTTTGTTTTAACTGCAAGGTCCCTTGGCATAGCGGTATGACATGCTATATTTACAAAATGTCGAATCCCAACCCTCCTGCTGAAGATTTGAAGCTGAAGTTTCTGGCATCAAGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTTCGAATTTTGCTATAACTGTGGTGCTGAGTGGAAGGACAAAAAATCAACATGTGTTTGCCCACTCTGGGCAGAGGACAATATTTGGATGGAGGAAAGGGACTCAGAAGATGATGATGATGATTATGATGATGATGATTATGATGATGGCTTTTTATTCTGA 1359 0.4481 MQKMREDVSRRIHDEKVAREISTMSETDWQQWGDNFEEPFDEGSSSSGRREEGVVRVYLKGLVSEENVRGEKVVLSGLGVAICDLNDNLIFQVSKSVVGNGTSKVVAELKALIEAFDVALSLDLKRIIYYSDYPPLFQFVRRKWSPKQKKIAMLIDRVLLLQRKFTYCDSRLLARQDVKFAFKLARDAIVSQSTRPREPGSTKSLNETCVICLEDTDVSQIFSVDECQHRYCFSCMKQHVEVKLLHGIVPKCPHEGCKYELLVDSCQKFLTQKLTDTMRQRKLEASIPTADKVYCPYPRCSALMTKTEVFEYSKDLIGESQLSGPKKCLKCHGLFCFNCKVPWHSGMTCYIYKMSNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGFEFCYNCGAEWKDKKSTCVCPLWAEDNIWMEERDSEDDDDDYDDDDYDDGFLF* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0742 452 SUPERFAMILY Ribonuclease H-like 92 166 IPR012337 -
Pvu11g0742 452 Gene3D - 56 195 IPR036397 GO:0003676
Pvu11g0742 452 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 427 - -
Pvu11g0742 452 SUPERFAMILY RING/U-box 207 289 - -
Pvu11g0742 452 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
Pvu11g0742 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 290 IPR013083 -
Pvu11g0742 452 Gene3D - 347 445 - -
Pvu11g0742 452 MobiDBLite consensus disorder prediction 432 452 - -
Pvu11g0742 452 ProSiteProfiles TRIAD supradomain profile. 205 429 IPR044066 -
Pvu11g0742 452 SUPERFAMILY RING/U-box 363 426 - -
Pvu11g0742 452 Pfam Reverse transcriptase-like 73 188 IPR002156 GO:0003676|GO:0004523
Pvu11g0742 452 Pfam IBR domain, a half RING-finger domain 282 349 IPR002867 -
Pvu11g0742 452 Pfam IBR domain, a half RING-finger domain 368 417 IPR002867 -
Pvu11g0742 452 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 427 IPR031127 GO:0004842|GO:0016567
Pvu11g0742 452 SMART ibrneu5 276 349 IPR002867 -
Pvu11g0742 452 SMART ibrneu5 362 417 IPR002867 -
Pvu11g0742 452 ProSiteProfiles Zinc finger RING-type profile. 209 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0742 Pvu-Chr11 6509536 6512707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0742 49 408 C3H Transcription Factor Family AT2G19610 34.247 1.04e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0742 - - gmx:100786163 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0742 11 6509536 6512707 Pvu11g0742 11 6509536 6512707 ECH