Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0741 ATGGAGAGCAGTGACACATACACCCCTGCTTCCTCTGCCCCACTTTCTCACTCCCCCACTTCCTCTTCTTCCTCACCACCACCTCCCACAGTTGTGATGACCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTGGCACCTTATTTTCCTCCCACTGAACCTGCCAAGTTCACCATTGCTCACCGTGTCTTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTATGAGGCTAGTTCAAGAATAAGAGACCCTGTTTATGGTTGTGCAGGAGCAATTTGCCAGCTCCAGAAGCAAGTGAATGAACTTCAAGCACAATTGGCAAAGTCACAAGCTGAGCTTGTCACCATGCAACTTCAGCAAGCCAATCTTGTGGCTCTAATTTGCATGGAGATGGCACAGAGTCCAGAGGAATCACCACAACAATCAGTGGACGATTTCATTTCAACTCCTCCTCACAGTGGTGGCTATCAAAGTGGCATGAACTTCTTTGAGGAGAACACTAGCCCAAACTCACTATGGGAGCCTCTTTGGACTTGA 603 0.4842 MESSDTYTPASSAPLSHSPTSSSSSPPPPTVVMTPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASSRIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPEESPQQSVDDFISTPPHSGGYQSGMNFFEENTSPNSLWEPLWT* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0741 200 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Pvu11g0741 200 MobiDBLite consensus disorder prediction 1 30 - -
Pvu11g0741 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 18 197 - -
Pvu11g0741 200 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g0741 200 Coils Coil 114 141 - -
Pvu11g0741 200 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Pvu11g0741 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0741 Pvu-Chr11 6484393 6486336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0741 31 200 AS2 family AT2G28500 64.865 5.53e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu11g0741 LOB 6.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0741 - - gmx:100789504 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0741 11 6484393 6486336 Pvu11g0741 11 6484393 6486336 ECH
Pvu5g1418 5 36555652 36557505 Pvu11g0741 11 6484393 6486336 PCT