Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0729 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGGCTCGTGACGGTGACTCGCCGTTACCGTTAGAGAAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAGTCAGGGACTTCTAATTCCTCCGTGGTGAATGCGGACGGGTCGAGTAACGGCGGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGTGCGAGCGACGTCGTAACGAAGGAGCTGTTTCCGGTGAGTGAAGGAGTGGCTACGTCGTCGTTTTCAGCGAGGAAAGGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGGAATAGTGAGATAAAGATGCTTCAGCCGCAACCTCAGACTCAGACTCAGCAACCGGCGAAGAAAAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTAACGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATTTTAAACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGTCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGTGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTGCATATGAAGGAGAGATAAAATCTGCAGCCATTAATGAAGTTGGCAATCAGAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGACCTAGTCCCAAAGAAAATTGGGAGCAACTTCAGTTCGCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACCAATGTTAATTCAGGAATTGGTAATCCATCTTTGAAAAGACTGGTTGTAAGTGAAGATTGTCCTTCTGTATGGAATGGAACGTGTTCTAGTTTCTTTCCCAATGAGGAAAAAACAGAGAGAATGAACATGGATCATTCAAAAGGATTCCCCAACTGGGCGTGGCAAACACATGCCCAGGTGAATGCTACCCCAGTGCCAACGTTCTCTGCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTGCAATCCCCACCAGAGTCTCTGTTTTACTTCATCCAGCGCGCATTCCAGCAATGCGTCCGAATATTATTACCAGGTTAAGCCCCCGCAGGCACCACTATAG 1458 0.4726 MLDLNLNAEWTDSARDGDSPLPLEKFPEGSRNQMAESGTSNSSVVNADGSSNGGCDEDSCSTRADDVYTFNFDILKVEGASDVVTKELFPVSEGVATSSFSARKGFVDLAFDREGGNSEIKMLQPQPQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVNADINFNLSDYEDDFKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSAYEGEIKSAAINEVGNQNLDLNLGIATPGPSPKENWEQLQFASVHYNTHGGISSMMETNVNSGIGNPSLKRLVVSEDCPSVWNGTCSSFFPNEEKTERMNMDHSKGFPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSMNCNPHQSLCFTSSSAHSSNASEYYYQVKPPQAPL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0729 485 MobiDBLite consensus disorder prediction 32 58 - -
Pvu11g0729 485 MobiDBLite consensus disorder prediction 119 149 - -
Pvu11g0729 485 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 452 - -
Pvu11g0729 485 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 SUPERFAMILY DNA-binding domain 239 298 IPR016177 GO:0003677
Pvu11g0729 485 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 PRINTS Ethylene responsive element binding protein signature 279 299 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 MobiDBLite consensus disorder prediction 1 59 - -
Pvu11g0729 485 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Pvu11g0729 485 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Pvu11g0729 485 Gene3D AP2/ERF domain 239 298 IPR036955 GO:0003700|GO:0006355
Pvu11g0729 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 452 - -
Pvu11g0729 485 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 MobiDBLite consensus disorder prediction 121 137 - -
Pvu11g0729 485 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Pvu11g0729 485 Pfam AP2 domain 239 289 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0729 Pvu-Chr11 6338128 6342324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0729 1 445 AP2-EREBP Transcription Factor Family AT5G60120 45.702 2.38e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu11g0729 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0729 K09284 - gmx:100788303 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1430 5 36714215 36718541 Pvu11g0729 11 6338128 6342324 PCT