Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0685 ATGAGTAAGTGTTTGATGTTGGTGGAGGAAGTGGGTGAAGGGGCATCAAGAGAGAGGGTTGTGAAGAGTGGTGAGTTTAAGTGCAAGACTTGTGACAAGCAATTTCCTTCATTTCAAGCCCTTGGAGGGCACAGAGCTAGCCACAAGAAGCTAAAACGCATGGCTTCGAACCTTCCGTGTTCGGTGGTCACACCAAAATTGCACCAGTGCTCAATTTGTGGACTTGTGTTTGGCATTGGACAAGCTTTGGGAGGACATATGAGAAAGCATAGAGTTTCCTCAATTCATCATCATCACCAAGATCTGCCAAAATCTAGCGCCACTAAAAACCTTCGTTTCTGCTTCGACTTGAACTTGACACCCTACGAGAATCATCTCAACCTCAATTTAAGAACACCTGTGTCACATTTGTTCATGTGA 420 0.4476 MSKCLMLVEEVGEGASRERVVKSGEFKCKTCDKQFPSFQALGGHRASHKKLKRMASNLPCSVVTPKLHQCSICGLVFGIGQALGGHMRKHRVSSIHHHHQDLPKSSATKNLRFCFDLNLTPYENHLNLNLRTPVSHLFM* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0685 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Pvu11g0685 139 Pfam C2H2-type zinc finger 68 91 - -
Pvu11g0685 139 Pfam C2H2-type zinc finger 26 50 - -
Pvu11g0685 139 SUPERFAMILY beta-beta-alpha zinc fingers 26 90 IPR036236 -
Pvu11g0685 139 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Pvu11g0685 139 SMART c2h2final6 68 90 IPR013087 -
Pvu11g0685 139 SMART c2h2final6 26 48 IPR013087 -
Pvu11g0685 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Pvu11g0685 139 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Pvu11g0685 139 Gene3D Classic Zinc Finger 23 90 - -
Pvu11g0685 139 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 1 136 - -
Pvu11g0685 139 PANTHER ZINC FINGER PROTEIN ZAT5 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0685 Pvu-Chr11 5792300 5792719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0685 1 125 C2H2 Transcription Factor Family AT2G28710 43.796 7.62e-31 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g0685 zf-C2H2_6 1.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0685 - - gmx:112998408 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1462 5 37075049 37075817 Pvu11g0685 11 5792300 5792719 PCT