Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0680 ATGCAAATAAGCCGTGCATTAGCGAAAGGCAACCCTCTTCTTTTCCCCTTATCTAGATTTCTGTGTGTGCGTCATCATTCATCAGCCAACTTGTTTGTCGCAGGGCTTTCCTGGGATACCAATGAACCGATTCTGAGAGATGCCTTTGAGCAGCATGGTGAAATCATTGAAGTTAGAGTAATATGTGATCAAGTGACTGGGAAATCTAAAGGTTATGGATTGGTGCGGTTTGTTTCTGAAACTACAGCTGCTACAGCTCGCAAAGAAATGAATGGCCAGATACTGGATGGCAGACGCATTCGGGTTAGTTATGCACACAAACGCTAG 327 0.4434 MQISRALAKGNPLLFPLSRFLCVRHHSSANLFVAGLSWDTNEPILRDAFEQHGEIIEVRVICDQVTGKSKGYGLVRFVSETTAATARKEMNGQILDGRRIRVSYAHKR* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0680 108 SMART rrm1_1 30 103 IPR000504 GO:0003723
Pvu11g0680 108 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 107 - -
Pvu11g0680 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Pvu11g0680 108 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 15 107 - -
Pvu11g0680 108 Gene3D - 19 108 IPR012677 -
Pvu11g0680 108 SUPERFAMILY RNA-binding domain, RBD 26 107 IPR035979 GO:0003676
Pvu11g0680 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0680 Pvu-Chr11 5762596 5764896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0680 30 108 Eukaryotic Initiation Factors Gene Family AT4G34110 35.443 1.34e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0680 K13195 - gmx:100306540 177.563