Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0677 ATGTATGCAGCCCTGGATTTGACTCTCGATGACATAATCAAGAACAACAAGAAATCTGGATCCGGAAACTTCCGTGGTCAGAACCGATCATCCGGATCCGGACCCGGACCTTCACGCCGCTTCCCCAGCCGTGTTGCCAACCGCGCCGCTCCTTATGCCGCCGCCAACGCCGACGCGACTTGGAAGCACAATTTATACGCAGATCAGTACGTGGCTGCGGCGGGGTACTCTGCTCGAGGTGGTTTTGCGTCTTCTATTGAAACTGGGACCAAACTTTTCATTTCTAACTTGGATTATGGTGTTTCCAATGACGATATTAAGGAATTGTTTTCTGAAGTTGGTGACATGAAACGGCACGGGGTTCATTACGACAGGAGTGGAAGATCGAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAATTAGATGGCAAACCAATGAAGATAGAGATTGCGGGAGCAAACATTTCTACCCCTGGTGTTCCTCGAAGTGGACAAGGAAGAAATGGGGCATTAAGAAAGCCAGGAGGAAGGGGGCAAGGCATGCAAAGGGATCGAGGTCAAGGAAGAGGTCACGGTGGAGGAAGACGTGACGATAAATTATCTGCAGATGATCTGGATGCTGATCTGGAGAAGTATCACGCCGAGGCAATGCAATTGAACTGA 705 0.4922 MYAALDLTLDDIIKNNKKSGSGNFRGQNRSSGSGPGPSRRFPSRVANRAAPYAAANADATWKHNLYADQYVAAAGYSARGGFASSIETGTKLFISNLDYGVSNDDIKELFSEVGDMKRHGVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIAGANISTPGVPRSGQGRNGALRKPGGRGQGMQRDRGQGRGHGGGRRDDKLSADDLDADLEKYHAEAMQLN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0677 234 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 233 - -
Pvu11g0677 234 Gene3D - 79 215 IPR012677 -
Pvu11g0677 234 CDD RRM_THOC4 90 164 - -
Pvu11g0677 234 Pfam C-terminal duplication domain of Friend of PRMT1 176 228 IPR025715 -
Pvu11g0677 234 MobiDBLite consensus disorder prediction 168 234 - -
Pvu11g0677 234 MobiDBLite consensus disorder prediction 18 43 - -
Pvu11g0677 234 SMART rrm1_1 91 163 IPR000504 GO:0003723
Pvu11g0677 234 SUPERFAMILY RNA-binding domain, RBD 86 194 IPR035979 GO:0003676
Pvu11g0677 234 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 233 - -
Pvu11g0677 234 MobiDBLite consensus disorder prediction 202 227 - -
Pvu11g0677 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
Pvu11g0677 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Pvu11g0677 234 MobiDBLite consensus disorder prediction 18 37 - -
Pvu11g0677 234 SMART FoP_duplication_2 165 234 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0677 Pvu-Chr11 5733428 5737665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0677 89 165 Eukaryotic Initiation Factors Gene Family AT2G23350 35.065 3.98e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0677 K12881 - gmx:100775827 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1469 5 37113698 37117710 Pvu11g0677 11 5733428 5737665 PCT