Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0666 ATGGAGAGTGAAAATGAGGAGTTGGAGATGGGAGGGTCTAACGGGGTTGCAGCCAGTTCACGGTGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAACCTGTATAAGCAGGGAATAAAGACTCCCAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTTAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAAAATCACAAAGCTAGGCAGAGACAGAAGCAGAAGCAAGAAACCATCGCTTACTTCAATCGCTTTCTTCATACTCCCCAGCCCTTTTTTTCTCCGCCAATTTGCCCAAATGGCCTGTGCCCTCCATATTGTGTACCTCAGGCGCAGAGTGAAAATGGTTTTTACCCCCCACATCCAAAGGTGCTTGTACCAGTAGGTTTTAGGAGAAGCCCGTCTGAGATATTTGTGCCCACAGACATGTCAAACATGATCAGCAATGGCCCTCTGGCATACGAAGCCATGCAACAGAGAATCTCGGATTGTAACTTCAGCTACAGTAACCAAGAAACCTTGGATCTCTTTCCTCTGCACCCAACTGGTATTTTGGAAGGGAAAACAACATACCAGGTGTCTTCTCTGGCTTCAGTTTCTGCTGATAGTTCCAGTGATACACCTCCTGCTCCTTCTCCTGATATCAATGAAGATGATCCTTCCCCACTTAACCAACCCTTCTTTGATTTTTTACTACTTCTGGTCAAGGTTCTTAAGAGACTTCTTTTATGTCATTGGCTTGAACTTTTAATTCCCATGGCTCATCACTGA 792 0.4533 MESENEELEMGGSNGVAASSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPQPFFSPPICPNGLCPPYCVPQAQSENGFYPPHPKVLVPVGFRRSPSEIFVPTDMSNMISNGPLAYEAMQQRISDCNFSYSNQETLDLFPLHPTGILEGKTTYQVSSLASVSADSSSDTPPAPSPDINEDDPSPLNQPFFDFLLLLVKVLKRLLLCHWLELLIPMAHH* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0666 263 MobiDBLite consensus disorder prediction 203 218 - -
Pvu11g0666 263 SMART HOX_1 17 84 IPR001356 GO:0003677
Pvu11g0666 263 SUPERFAMILY Homeodomain-like 20 86 IPR009057 -
Pvu11g0666 263 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g0666 263 ProSiteProfiles 'Homeobox' domain profile. 15 80 IPR001356 GO:0003677
Pvu11g0666 263 Gene3D - 19 87 - -
Pvu11g0666 263 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 1 238 - -
Pvu11g0666 263 MobiDBLite consensus disorder prediction 203 226 - -
Pvu11g0666 263 CDD homeodomain 21 81 IPR001356 GO:0003677
Pvu11g0666 263 Pfam Homeodomain 19 79 IPR001356 GO:0003677
Pvu11g0666 263 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 238 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0666 Pvu-Chr11 5651481 5653554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0666 15 238 Wox Gene Family AT5G59340 44.355 4.98e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pvu11g0666 Homeodomain 6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0666 - - pvu:PHAVU_011G064900g 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0666 11 5651481 5653554 Pvu11g0666 11 5651481 5653554 ECH