Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0664 ATGGAGGGCGAGAACGTGAGCAAGGTGATTGATTTGGTGAGCGAGGTAGCGAGCAAGGTGATTGAGTTGGTGAACGAGGTAGCGAGCATCTCGGAGTACAGGCCTCCGGTGAAGAAGGAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGCTGATCCCGATGTTCGAGGAAATTAGGGACATGAAAGACCCGATCCCCAAGGACACTTCCAAAGCCGTCCTCGCCTTCAAGGAAGCTCTTGAATCCGCCAGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGGTATTATGAATAAATTCTACGAGGTGACAGCTCGGTTGGAACAATCATTGGGTGGTATTTCCTATGATGAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGACGAACCAGATGTTAGGTTGTATGAGGATATGTTGTCCCTCTACGACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCGATTAGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCACTTGCTTTGCATGAGATGGTATCAAGCGGTGGAGATCCTGGGGCACGCATCGAGAAAATAGCGATGTTACTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATATAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAGGTCTATGGAGTCGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGAAGATTTTCGATGTCCAATTTCCCTGGAATTAATGAAGGATCCTGTCATCGTTTCAACCGGACAGACTTATGAGCGTTCTTGTATTGAGAAATGGTTGCAAGCAGGGCATAGGACATGCCCCAAAACACGGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTCTTACGAAGTCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCTGCTGAGCGAAGTAAGATCGACGGGCTTCTGCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATTCCTCTCCTCGTTGGTCTCTTGTCTGTGCCTGACTCTCGCACTCAAGAACATGCTGTGACAGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATCGTCTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACTATTGGATCTTCAGGAGCCATACCTCCACTAGTGATACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCTCTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGGAAGGCAGTGCGGGCTGGGGTTATCCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTAGATGAAGCATTAGCTATTTTGGCAATACTGGCTAGCCATCCTGACGGGAAGGCTACCATTAGAGCTGCAGAGGCAGTGCCAGTTTTAGTAGAGTTTATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCATCTTTGTTCTGGAGATCAACAATATCTTGCACAGGCTCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAGTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTACTAGAGCGTATAAGCAGGTTACTTGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCTGAACGAGGAAACCCAACTTCCTTTGATTACTAACCCAGATGATTCGTAA 2013 0.469 MEGENVSKVIDLVSEVASKVIELVNEVASISEYRPPVKKEYCNLARRLKLLIPMFEEIRDMKDPIPKDTSKAVLAFKEALESARELLRFGSEGSKLYLVLERDGIMNKFYEVTARLEQSLGGISYDELDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSLYDNSSDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVSSGGDPGARIEKIAMLLKKIKDYVQTENIVKDDNLGGKGIFAKVYGVGTNEKSHQAPVIPEDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHRTCPKTRQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSQPSKSASAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVILLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPDGKATIRAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKAAQLLERISRLLEQQQEVPTQTETQALNEETQLPLITNPDDS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0664 670 Pfam Neurochondrin 527 645 IPR008709 -
Pvu11g0664 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 526 568 IPR000225 GO:0005515
Pvu11g0664 670 PANTHER U BOX DOMAIN-CONTAINING 14 653 - -
Pvu11g0664 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 403 445 IPR000225 GO:0005515
Pvu11g0664 670 MobiDBLite consensus disorder prediction 644 670 - -
Pvu11g0664 670 Pfam U-box domain 265 335 IPR003613 GO:0004842|GO:0016567
Pvu11g0664 670 SUPERFAMILY ARM repeat 363 638 IPR016024 -
Pvu11g0664 670 Coils Coil 626 646 - -
Pvu11g0664 670 MobiDBLite consensus disorder prediction 338 358 - -
Pvu11g0664 670 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 653 - -
Pvu11g0664 670 SUPERFAMILY RING/U-box 255 341 - -
Pvu11g0664 670 SMART arm_5 433 473 IPR000225 GO:0005515
Pvu11g0664 670 SMART arm_5 392 432 IPR000225 GO:0005515
Pvu11g0664 670 SMART arm_5 515 555 IPR000225 GO:0005515
Pvu11g0664 670 SMART arm_5 598 638 IPR000225 GO:0005515
Pvu11g0664 670 SMART arm_5 556 596 IPR000225 GO:0005515
Pvu11g0664 670 SMART arm_5 474 514 IPR000225 GO:0005515
Pvu11g0664 670 Gene3D - 10 125 IPR036537 GO:0007166
Pvu11g0664 670 Gene3D - 498 655 IPR011989 -
Pvu11g0664 670 Gene3D - 349 497 IPR011989 -
Pvu11g0664 670 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Pvu11g0664 670 CDD RING-Ubox_PUB 269 311 IPR045210 -
Pvu11g0664 670 Pfam Armadillo/beta-catenin-like repeat 475 513 IPR000225 GO:0005515
Pvu11g0664 670 Pfam Armadillo/beta-catenin-like repeat 392 431 IPR000225 GO:0005515
Pvu11g0664 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 338 IPR013083 -
Pvu11g0664 670 MobiDBLite consensus disorder prediction 340 356 - -
Pvu11g0664 670 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0664 Pvu-Chr11 5619488 5624484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0664 17 654 U-box Gene Family AT3G46510 71.184 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0664 - - pvu:PHAVU_011G064700g 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0664 11 5619488 5624484 Pvu11g0664 11 5619488 5624484 ECH