LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0661	ATGCCTTCTAACGCTCTACACTTCTCAACTCAACCACCCCACCTCATGGCCATGGATGACTATGAATGTGATGAGAAGGTCCACGTGGCAGTTGGGAAGTCCCTTAAGAAAGACACCACTTTGATTCAATGGTGTTTCACCCATTTCAGCAGTGCACATATATGCTTACTTCATGTTTATCGACCTTCTACTATGATCCCCACACTATTAGGAAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTCGTGTCTGCTTATAGAATAGAGGAAAGAGAAGACAGCAAGAGGCTTATGGAGAAGTACTTGAGCCTTTGCCGTGCAGCTAAGGTTAAGGTAACTAGTATCATTGGTGAAGCTGATCAAGTTCAGAAAGGGATTGTAGATTTGGTTACTGTGCATAATATCAGGAAGCTTGTTATTGGAGCAATAACCCCAGAAAATTGCATGAAACTCAAAAGGAATTCCAGTAAAGCAAACTTTGCAGTTAAAAATGTTCCTCCATTCTGTGAAATATGGTTTGTCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCCTTGTTTTGTGTCTTCCCATGCTCAACCTGAGACTACAACGGCAGAGAGCTTGAGTTGTAGATCATTTCAATATGGTACAAATGAATTATTCCATTCAGAATGTCTTCAATCAAATTCTACAAGGACTACACGAAGTACAGTTCCCAATGAAATTATTGAAGCAGAAGCCACTTTTTCATCCAAATCATCCAGTTGCAATAGTTATTGTTCTCCCCAACATTCAGCTAGTCCGCATATAGATACTCATTCAGAGCCTGAGGAAGAAAAAATAGATAGTCAACTTATTGAAGCCAAAGCAGAAGCTAATGCTGCAACAGACAAGGCCCTTGTGGAGCTGTTCAAGTGCAAAAGGTTGGAATTCAAAGCCATTGAGGCCATTAATAAGGTGGACTTTTTTGAATCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGTTGGGGATGCAATGAGCGCTACAATACAGGAGCAACGGATGTTCTTGGAGGAGAAAGAAGAAATTTCTAGAGAACTGGAAAGGACCACAAGAAGTATTTCCCTTCTAGAAAATTGTGTACATGAAATCAACAGTAAGCTAGATGAAGCTACACATGAACTATCACTAATTCAAGCATCCTCCTCAAACCTGCAGCATGAAAAGCAGGAAATCAGACGACAGAAAATGGAAGCCCTACACTGGCTTGAGCGGTGGAAAAGTTGTGGACATGTTGGAGCAGATCACTGCATCATTGGGTTTTCCGAAGAATTTCCGGAATTGGCAGAATTTTCATTATCAGATCTTCAAAACGCAACGTGCAATTTTTCTGAGAGTTTCAAAGCTATGGAGGGTGGATATGGTTCTATTTATAAGGGAGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCAGCAGAGTTTCATCAAGAGGTTCGAGTTCTTGGTAGTATCCAGCACCCTAATCTGGTTACTTTGCTTGGTGTATGCCCTGAAGCCTGGTCATTTGTATATGAATACTATCCCAATGGAAGTCTTCAAGATTATCTATCCCGAAAAGGAAGTCTTCTCCCTTTGACATGGACTATCCGAGTACGATGGATTTCTGAAATTGCTAGAGCTCTCTGCTTCCTACATTCTTCCAGACCTGAAACTATTATTCACGGTGGTCTGACGCTTGAAACTGTCCTTCTTGACACTGGACTTAGTTGCAAGATATGTGATTTTGGGTTCAGCAGGCTAGTGAAAGAGGAGTCACTTTCTCTTCCTTGTTTTCACTTAAGCACTGAGCCAAAGGGTTCTTTTTCGTATATAGATCCTGAGCTTCAGAGAACTGGAGTACTAACACCTAAGTCTGACGTATACTCTTTTGGACTCATCATTCTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCTGGTGAAGTGCGCAGAGCAATTTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGAATTCCACAGGGGCAACACGATTGGCTGAACTGGGATTGCAATGCTGCCAACTGAACAGTAGAGACAGACCAGAGTTAACACCCTCTCTAGTGAGGGAATTGAAGCAGTTGTACGTTTCAGAAGAGCGACCAGTGCCACCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGATGGATTTACTTATGAAAGGAAGGCCATAAGAGAATGGCTGGAATATGGGCACGAAACTTCTCCTATGACTAATTTAAAATTGAGTTACCTGCATCTCACTCACAATAATGCACTTCGATTTGCTATTCAAGACTGGCTTTGCAAATCTTGA	2403	0.4157	MPSNALHFSTQPPHLMAMDDYECDEKVHVAVGKSLKKDTTLIQWCFTHFSSAHICLLHVYRPSTMIPTLLGKLPASQASPEVVSAYRIEEREDSKRLMEKYLSLCRAAKVKVTSIIGEADQVQKGIVDLVTVHNIRKLVIGAITPENCMKLKRNSSKANFAVKNVPPFCEIWFVYKGKHIWTREASETPCFVSSHAQPETTTAESLSCRSFQYGTNELFHSECLQSNSTRTTRSTVPNEIIEAEATFSSKSSSCNSYCSPQHSASPHIDTHSEPEEEKIDSQLIEAKAEANAATDKALVELFKCKRLEFKAIEAINKVDFFESAHAHEVKLRKEVGDAMSATIQEQRMFLEEKEEISRELERTTRSISLLENCVHEINSKLDEATHELSLIQASSSNLQHEKQEIRRQKMEALHWLERWKSCGHVGADHCIIGFSEEFPELAEFSLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSAEFHQEVRVLGSIQHPNLVTLLGVCPEAWSFVYEYYPNGSLQDYLSRKGSLLPLTWTIRVRWISEIARALCFLHSSRPETIIHGGLTLETVLLDTGLSCKICDFGFSRLVKEESLSLPCFHLSTEPKGSFSYIDPELQRTGVLTPKSDVYSFGLIILQLLTGRTPVGLAGEVRRAISCGKLSSILDSSAGEWNSTGATRLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEERPVPPFFLCPIFQEIMHDPQVAADGFTYERKAIREWLEYGHETSPMTNLKLSYLHLTHNNALRFAIQDWLCKS*	801

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu11g0661	800	PANTHER	OS10G0100500 PROTEIN	21	799	-	-
Pvu11g0661	800	Coils	Coil	391	411	-	-
Pvu11g0661	800	ProSiteProfiles	Protein kinase domain profile.	456	724	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu11g0661	800	ProSiteProfiles	U-box domain profile.	729	800	IPR003613	GO:0004842\|GO:0016567
Pvu11g0661	800	Gene3D	Phosphorylase Kinase; domain 1	433	528	-	-
Pvu11g0661	800	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	730	800	IPR013083	-
Pvu11g0661	800	CDD	RING-Ubox_WDSUB1_like	734	775	-	-
Pvu11g0661	800	Pfam	Protein tyrosine and serine/threonine kinase	464	712	IPR001245	GO:0004672\|GO:0006468
Pvu11g0661	800	Gene3D	HUPs	22	142	IPR014729	-
Pvu11g0661	800	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	46	142	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0661	Pvu-Chr11	5585784	5592897	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g0661	24	797	U-box Gene Family	AT2G45910	35.411	3.20e-160	485

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Pvu11g0661		PK_Tyr_Ser-Thr	2.9e-34	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0661	-		-	gmx:100799032	1294.64

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu5g1483	5	37233777	37238162	Pvu11g0661	11	5585784	5592897	PCT

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