Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0641 ATGAATTCGGACACGCAACACGGAACGCCGTCGTATTGGTGCTACAACTGCACCCGCTTCATTAACCTCTCCTCGCAAGCCACCATCGCCTGTCCCCACTGCCAGAGCGGCTTCGTCGAAGAGATCCGTGCCGACGCCTCGCCGCGCCACCGTCTCAGCCCTTTCCCCGACGACCATCTTTCACTCCGCCGACAGGGACTCCGTCGCCGCCGTCGCGACGCTGCCGGGAACCGCTCTCCCTTTAACCCTGTAATCGTCCTTCGTGGACCTGGCGATGACTCTGCCGCTGAACACGATGGCGCCAGCACCTTCGAGCTCTTCTACGACGACGGTGACGGCACTGGCCTCCGTCCGCTCCCGCCCACCATGTCGGAGTTCCTTCTCGGCTCGGGCTTCGACCGCCTACTAGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAACCCGCCGGCGTCCAAGGCGGCGATCGAGTCCATGCCGACGATCGAGATCGGTGAAGCGCATGTGGAGACCGAGGCGCACTGCGCCGTGTGCAAGGAGGCGTTTGAGGTCCACGCGGAGGCGCGTGAGTTGCCCTGCAAACATATTTACCACTCCGACTGCATCCTCCCGTGGCTCTCCATGCGGAACTCGTGCCCGGTGTGCCGCCACGAGCTTCCGTCCGATTTGGAAACTAGGGCTCCGAGTCAGATCGACGAGGAGGCGATAGGGTTAACTATCTGGAGGCTTCCGGGTGGGGGATTCGCCGTGGGTCGATTTTCTGGCGGCCGGAGAGCTGGAGATAATCATTTCCCGGTTGTGTACACGGAAATGGACGGTGGACTGAACTCGAACGGAGCTCCGAGGAGAATTTCTCGGTCGGTGAGAAGCAGTAGGGTTAGGGAGAGTCGAGGGTTTGGTAGGGTTGTTCGCAATTTGTTTTCATTCTTTGGAAGGATTGGTTCTAGAAACTCTTCTTCGTCTTTGTCATCTTCCGAGCATGCTTCCGTGAGTAGAAGCCGTAGTCAAGTGAGTTCAGTCTTCAACAGAAGCTCACGGAGACATAGCTGA 1062 0.5942 MNSDTQHGTPSYWCYNCTRFINLSSQATIACPHCQSGFVEEIRADASPRHRLSPFPDDHLSLRRQGLRRRRRDAAGNRSPFNPVIVLRGPGDDSAAEHDGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTIEIGEAHVETEAHCAVCKEAFEVHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRAPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGDNHFPVVYTEMDGGLNSNGAPRRISRSVRSSRVRESRGFGRVVRNLFSFFGRIGSRNSSSSLSSSEHASVSRSRSQVSSVFNRSSRRHS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0641 353 CDD RING-H2_RNF126_like 179 220 - -
Pvu11g0641 353 Pfam Protein of unknown function (DUF1117) 240 350 IPR010543 -
Pvu11g0641 353 MobiDBLite consensus disorder prediction 320 347 - -
Pvu11g0641 353 Pfam Ring finger domain 178 220 IPR001841 -
Pvu11g0641 353 MobiDBLite consensus disorder prediction 67 98 - -
Pvu11g0641 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 304 - -
Pvu11g0641 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 304 - -
Pvu11g0641 353 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Pvu11g0641 353 SUPERFAMILY RING/U-box 159 230 - -
Pvu11g0641 353 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Pvu11g0641 353 MobiDBLite consensus disorder prediction 320 353 - -
Pvu11g0641 353 SMART ring_2 179 219 IPR001841 -
Pvu11g0641 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 226 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0641 Pvu-Chr11 5425290 5427120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0641 118 226 C3H Transcription Factor Family AT5G01980 45.872 9.05e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0641 - - gmx:100792874 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1508 5 37437248 37439200 Pvu11g0641 11 5425290 5427120 PCT