Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0632 ATGGAATCTGATCATGATCACCAAGCAGCAATATCTGAAAATCCCTCTGATGGGGAGGACCAAGGTGCAACTCACGTGACATCCAGGTCCTACGAGTGCAACTTCTGCAAGAGGGGCTTCTCCAATGCACAAGCACTGGGGGGACACATGAACATCCACAGGAAAGACAAAGCCAAGCTCAAGCAACAACAATCTTCAAATCAAACTCAAGTTCAACCATCTTTGGACAAGGTTGTCCCTCCACAGGATCAGACCAAGTCTGGTGAAGAACGCAACGCACCAAAATGGAATTGGAATGTGTCTCAAGAAGAACATGTACTCTCTTCTGGAGCCACTCACACAAGGCAGCTTCCACTCTTTGAAGAATCACCAACTAGCAGTGAAACACTAAACCCACAAGGTCAAAATACCACTGAAGGAGCTTTGTTATCTACCCGAGATTCATCATTGGAGTTAGACCTTGAACTCAGACTGGGACCTGAACCACAGGATTCATCAGCAGAAACGGGTACAAGAAATTTTTTTTGA 528 0.4564 MESDHDHQAAISENPSDGEDQGATHVTSRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQTQVQPSLDKVVPPQDQTKSGEERNAPKWNWNVSQEEHVLSSGATHTRQLPLFEESPTSSETLNPQGQNTTEGALLSTRDSSLELDLELRLGPEPQDSSAETGTRNFF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0632 175 PANTHER OS07G0101800 PROTEIN 1 167 - -
Pvu11g0632 175 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
Pvu11g0632 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Pvu11g0632 175 MobiDBLite consensus disorder prediction 1 27 - -
Pvu11g0632 175 MobiDBLite consensus disorder prediction 47 175 - -
Pvu11g0632 175 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 167 - -
Pvu11g0632 175 Pfam C2H2-type zinc finger 31 55 - -
Pvu11g0632 175 Gene3D Classic Zinc Finger 18 92 - -
Pvu11g0632 175 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Pvu11g0632 175 MobiDBLite consensus disorder prediction 62 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0632 Pvu-Chr11 5340529 5341428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0632 10 63 C2H2 Transcription Factor Family AT3G09290 62.963 8.46e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g0632 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0632 - - vun:114170729 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0632 11 5340529 5341428 Pvu11g0632 11 5340529 5341428 ECH