Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0615 ATGAGAAAGCCCGAGGTGTCTGGAAAAAACAACTCCAACATTAATTACAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATTGTCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCTGGGAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACTTGTCATCCAACACCTCACCAAATGGAAGCGAGTCGTCATATGACCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCATCAAGATCAACTAGCTGATTTTATGCCTATGTTGAATTCATCATCTCCATCACCATCCATGCATGCCACAGTTCTCAATTCCATAATTGACAGGTTGCCTTTGCTAGATCATGGACAAAACATGCCAGTTTCTGGTGGATTCTTCAATGGCACAGAACCATATTTCTCATCGCAAAGTGGAGTTGATCACAAAGGTTTTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCTGAAGGAGATATGTATGTTCCTCCTCTAGAGAGTGTAAGCACTACTTCTGACCATAACCTGAAAGTTGAGAGCACATGCAACACAGATACTAACAATAGTTACTTCGATGATATAAACAGTGTCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGGCTGGGGTGGAGAATTTATTTCAAGAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA 984 0.4106 MRKPEVSGKNNSNINYKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSNTSPNGSESSYDPNKDLNMAGFTTSNTHQDQLADFMPMLNSSSPSPSMHATVLNSIIDRLPLLDHGQNMPVSGGFFNGTEPYFSSQSGVDHKGFYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSVILNNCSNKRTENRAGVENLFQEELTMGEWDLEELMKDVSSFPFLDFSNIQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0615 327 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Pvu11g0615 327 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Pvu11g0615 327 Gene3D - 74 144 - -
Pvu11g0615 327 CDD SANT 75 115 IPR001005 -
Pvu11g0615 327 PANTHER MYB TRANSCRIPTION FACTOR 2 324 - -
Pvu11g0615 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Pvu11g0615 327 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Pvu11g0615 327 SMART sant 72 120 IPR001005 -
Pvu11g0615 327 SMART sant 19 69 IPR001005 -
Pvu11g0615 327 Gene3D - 17 73 - -
Pvu11g0615 327 PANTHER MYB DOMAIN PROTEIN 55 2 324 - -
Pvu11g0615 327 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Pvu11g0615 327 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Pvu11g0615 327 CDD SANT 23 67 IPR001005 -
Pvu11g0615 327 MobiDBLite consensus disorder prediction 124 147 - -
Pvu11g0615 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0615 Pvu-Chr11 5205325 5207669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0615 1 320 MYB Transcription Factor Family AT5G12870 45.794 1.86e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g0615 Myb_DNA-binding 9.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0615 K09422 - gmx:100786151 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1522 5 37514783 37517736 Pvu11g0615 11 5205325 5207669 PCT