Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0602 ATGACAAATTCCTACAGATCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTGCATCAACTCCTCCCATCAATCCGTCATTCTATTTTCCTTCCAATTATCATACCTACACCACTGTCATATCTTCTACTCAGTTCCAATCCTCTCCTCCTCAAACAGAAGCCCTTCCTTTCCTTCATCTCAGACATCAAGAAGAAGAAGCACAATATCTTCAATCTTCATTCAGTGCCATGGAAGTGGACAAGAAAAAGGAAGACCTAAGTACATCCAAGTGCTTGGATGAAGAGGATGCTGTCACAGTGGCTTTACACTTAGGGCTTCCAAGCACTAGTGCATCTGCTGATTCAGCTTCAAGCCTATACTCAGCAGAGGTTTCAGACAAAGAAGAAAAAATCAGTGATGCTTCGGGGCTACTGTCAGATAGAATTAACAAAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCGTGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAATCTCTAAGGGGAACACAACCAACAGCTATGCTAAGGCTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCGAGAGCAAAACCACTCAAAGACTTTAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACATTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGGTCTGATTTCAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCATTTGGATATGAACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGCTCTGAAATCGAACAAGAAAATTAA 996 0.4287 MTNSYRSNDLNFWLDLNSPCLLSSPSASTPPINPSFYFPSNYHTYTTVISSTQFQSSPPQTEALPFLHLRHQEEEAQYLQSSFSAMEVDKKKEDLSTSKCLDEEDAVTVALHLGLPSTSASADSASSLYSAEVSDKEEKISDASGLLSDRINKGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYEHTAHGNDCMNLDQDDDQAGSEIEQEN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0602 331 Gene3D Classic Zinc Finger 233 311 - -
Pvu11g0602 331 PANTHER ZINC FINGER PROTEIN WIP2 6 331 IPR043584 GO:0003700|GO:0010468
Pvu11g0602 331 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Pvu11g0602 331 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 6 331 - -
Pvu11g0602 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Pvu11g0602 331 SUPERFAMILY beta-beta-alpha zinc fingers 237 275 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0602 Pvu-Chr11 5079595 5082040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0602 43 329 C2H2 Transcription Factor Family AT1G51220 59.868 5.07e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g0602 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0602 - - gmx:100802239 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1533 5 37617397 37619615 Pvu11g0602 11 5079595 5082040 PCT