Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0596 ATGAACAACAACTGGCTTTCCTTCCCTCTTTCTCCTACTCATTCTTCCTTACCATCCCATGATCTTCAAGCAACTCAATACCATCAATTTTCCCTTGGGCTGGTGAACGAGAGCATGGAAAACCCTTTCCAAAATCATGATTGGAATATGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCCAATGATTCAGATTATCTCTTCACAAACAACAGTCTCGTGCCTTTGCAAAACCCTGTGGTTGACACACCTAGCAATGAGTATCAAGAAAATGCTAATAGTAATTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCTACATGTGAGACCAGTGGTGAAAACAGTACAAACACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGGCAGAGAACATCCATATATCGTGGAGTAACGCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGTTTATTTGGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCTGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATTAGAAGGAAAAGTAGTGGTTTCTCCAGGGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGGAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTGAATGCTGTGACAAACTTTGACATGAGCCGTTACGATGTGAAAGCCATTCTGGAAAGCAACACTCTCCCCATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCCTCTAGAAAACGTGAAGAGATGATTGCACTAGGCTCCTCCACCTTCCAATATGGAACCTCAAGCTCTTCTAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATAAGTTCTCACTTCTCTCACCAAGACCCTTTACACCCGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTGCAGAATAATCCTCAGTTCTACGGCGGTTACCTTCAGAACCCTCCAATGCTTCAGGGAATGGTGAACATGGGGTCCTCTTCTTCATCTTCATCTGTGTTGGAGAATAATAACAACAATAATAGTAATGTTGGTGGGTTTTTAGGGAGTGGGTTTGGTATGGCTTCGAATGCATCGTCGGGTAATGCGGTGGGCACGGCGGAGGAACTTGGATTGGTGAAAGTTGACTATGACATGCCGGCCGGAGGTTACGGTGGTTGGTCGGCGGCGGCGGCGGAATCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA 1635 0.4526 MNNNWLSFPLSPTHSSLPSHDLQATQYHQFSLGLVNESMENPFQNHDWNMINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNDSDYLFTNNSLVPLQNPVVDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDISSHFSHQDPLHPGYIQTQLQLHQQSGVSSYLQNNPQFYGGYLQNPPMLQGMVNMGSSSSSSSVLENNNNNNSNVGGFLGSGFGMASNASSGNAVGTAEELGLVKVDYDMPAGGYGGWSAAAAESMQTSNGGVFTMWNE* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0596 544 ProSiteProfiles AP2/ERF domain profile. 163 229 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 CDD AP2 162 231 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 SUPERFAMILY DNA-binding domain 264 325 IPR016177 GO:0003677
Pvu11g0596 544 ProSiteProfiles AP2/ERF domain profile. 265 323 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 CDD AP2 264 325 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 543 - -
Pvu11g0596 544 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 Pfam AP2 domain 266 315 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 Pfam AP2 domain 163 221 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 SMART rav1_2 265 329 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 SMART rav1_2 163 235 IPR001471 GO:0003700|GO:0006355
Pvu11g0596 544 Gene3D AP2/ERF domain 163 231 IPR036955 GO:0003700|GO:0006355
Pvu11g0596 544 Gene3D AP2/ERF domain 265 325 IPR036955 GO:0003700|GO:0006355
Pvu11g0596 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 543 - -
Pvu11g0596 544 SUPERFAMILY DNA-binding domain 162 231 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0596 Pvu-Chr11 5016893 5020109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0596 3 544 AP2-EREBP Transcription Factor Family AT1G51190 64.262 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu11g0596 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0596 K09285 - gmx:100788471 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0596 11 5016893 5020109 Pvu11g0596 11 5016893 5020109 ECH