Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0590 ATGAAGGAAAGTGGTGGTAGAAAGCAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTTCTGAGAAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCATATTTTCCAGCAGATGAACCTCAAAAGTTTGCAAATGTGCACAAGGTGTTTGGTGCTAGCAATGTCAACAAGATGCTTCAG 180 0.4611 MKESGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0590 60 ProSiteProfiles LOB domain profile. 13 60 IPR004883 -
Pvu11g0590 60 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 60 - -
Pvu11g0590 60 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 60 - -
Pvu11g0590 60 Pfam Lateral organ boundaries (LOB) domain 14 60 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0590 Pvu-Chr11 4940411 4940811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0590 1 60 AS2 family AT1G31320 93.333 7.11e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu11g0590 LOB 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0590 - - pvu:PHAVU_011G0575001 129.028